Results 21 - 40 of 379 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23847 | 5' | -47.6 | NC_005261.1 | + | 49195 | 0.77 | 0.809565 |
Target: 5'- gGCCcucgGCCGaCAGCGAGGGcgGGAgGCCg -3' miRNA: 3'- -CGG----UGGUaGUCGCUUCUuaUUUgCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 70966 | 0.77 | 0.800135 |
Target: 5'- cGCCGCgA-CGGCGAAGAA-GAGCGCg -3' miRNA: 3'- -CGGUGgUaGUCGCUUCUUaUUUGCGg -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 54764 | 0.77 | 0.800135 |
Target: 5'- cGCCGCCAgugCGGCGGgcgacaGGAcgGcGCGCCc -3' miRNA: 3'- -CGGUGGUa--GUCGCU------UCUuaUuUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 107688 | 0.77 | 0.790533 |
Target: 5'- uGCCGCCG-CGGCGggG-----GCGCCg -3' miRNA: 3'- -CGGUGGUaGUCGCuuCuuauuUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 13346 | 0.76 | 0.861993 |
Target: 5'- gGCCAgCgGUCGGCGGAGGcUGGGCGgCa -3' miRNA: 3'- -CGGU-GgUAGUCGCUUCUuAUUUGCgG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 101218 | 0.76 | 0.861993 |
Target: 5'- uGCCGCCG-CAGCGcgucGAGGu--GGCGCCu -3' miRNA: 3'- -CGGUGGUaGUCGC----UUCUuauUUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 102943 | 0.76 | 0.861993 |
Target: 5'- cGCCGCCGcugCGGCGgcGGccgcGGGCGCCg -3' miRNA: 3'- -CGGUGGUa--GUCGCuuCUua--UUUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 64004 | 0.76 | 0.869958 |
Target: 5'- aGCCGcCCAUCAGCGcguAG-GUGAGCGUg -3' miRNA: 3'- -CGGU-GGUAGUCGCu--UCuUAUUUGCGg -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 53160 | 0.76 | 0.853794 |
Target: 5'- cGCCGCCGUCGuCGggGuc-GAACGCg -3' miRNA: 3'- -CGGUGGUAGUcGCuuCuuaUUUGCGg -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 43426 | 0.76 | 0.853794 |
Target: 5'- uCCGCCGcCGGCGggGAGcUGgcucGGCGCCu -3' miRNA: 3'- cGGUGGUaGUCGCuuCUU-AU----UUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 15149 | 0.76 | 0.845368 |
Target: 5'- cCCGCCGUCcGCGGugGGggUGGGCGUa -3' miRNA: 3'- cGGUGGUAGuCGCU--UCuuAUUUGCGg -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 133158 | 0.76 | 0.845368 |
Target: 5'- cGCCGCCGUCGGCGucGc-----CGCCg -3' miRNA: 3'- -CGGUGGUAGUCGCuuCuuauuuGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 44853 | 0.76 | 0.836723 |
Target: 5'- aGCCGCag-CcGCGAGGAA-GAGCGCCg -3' miRNA: 3'- -CGGUGguaGuCGCUUCUUaUUUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 5560 | 0.76 | 0.836723 |
Target: 5'- gGgCGCCcgagCGGCGGAGAuggGGGCGCCg -3' miRNA: 3'- -CgGUGGua--GUCGCUUCUua-UUUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 135130 | 0.75 | 0.892381 |
Target: 5'- uCCGCagcgCGGCGggGGAgacGACGCCg -3' miRNA: 3'- cGGUGgua-GUCGCuuCUUau-UUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 103861 | 0.75 | 0.892381 |
Target: 5'- aGCCGCgG-CGGCGgcGGGgcGGCGCCg -3' miRNA: 3'- -CGGUGgUaGUCGCuuCUUauUUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 47265 | 0.75 | 0.885158 |
Target: 5'- cGCCGgcCCGcCGGCGAAGA----GCGCCg -3' miRNA: 3'- -CGGU--GGUaGUCGCUUCUuauuUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 112072 | 0.75 | 0.885158 |
Target: 5'- uGCCcUCGUCGGCGAGG-----GCGCCa -3' miRNA: 3'- -CGGuGGUAGUCGCUUCuuauuUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 19543 | 0.75 | 0.885158 |
Target: 5'- cGUCACCGcCAGCGccGugggGAGCGCCa -3' miRNA: 3'- -CGGUGGUaGUCGCuuCuua-UUUGCGG- -5' |
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23847 | 5' | -47.6 | NC_005261.1 | + | 62620 | 0.75 | 0.899346 |
Target: 5'- gGCgGCCAUCAGCGccAGcGUGuccggcgcGACGCCg -3' miRNA: 3'- -CGgUGGUAGUCGCu-UCuUAU--------UUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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