miRNA display CGI


Results 1 - 20 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23849 5' -59.1 NC_005261.1 + 84961 0.65 0.812673
Target:  5'- -cCGCCGagGCGuCGGGCgcguccgcgaugCGCCGGCGc -3'
miRNA:   3'- cuGCGGC--UGCuGCUCGa-----------GCGGCUGCu -5'
23849 5' -59.1 NC_005261.1 + 133188 0.79 0.171471
Target:  5'- cGGCGCCGuCGAgGAGUucaUCGCCGACGc -3'
miRNA:   3'- -CUGCGGCuGCUgCUCG---AGCGGCUGCu -5'
23849 5' -59.1 NC_005261.1 + 134102 0.79 0.171471
Target:  5'- cGCGCCGGCG-CGcGCUCGCCGcCGAc -3'
miRNA:   3'- cUGCGGCUGCuGCuCGAGCGGCuGCU- -5'
23849 5' -59.1 NC_005261.1 + 70814 0.78 0.193746
Target:  5'- cGCGCCGGCGGCcccGGGCgCGCCGGCGc -3'
miRNA:   3'- cUGCGGCUGCUG---CUCGaGCGGCUGCu -5'
23849 5' -59.1 NC_005261.1 + 69506 0.78 0.203345
Target:  5'- uACGCCGGCGGCGGGCUgccggaGCUGGCGc -3'
miRNA:   3'- cUGCGGCUGCUGCUCGAg-----CGGCUGCu -5'
23849 5' -59.1 NC_005261.1 + 88810 0.78 0.207797
Target:  5'- gGACGCCGGCGGCGgggcggcGGCgcgCGCCGGCc- -3'
miRNA:   3'- -CUGCGGCUGCUGC-------UCGa--GCGGCUGcu -5'
23849 5' -59.1 NC_005261.1 + 29246 0.78 0.208297
Target:  5'- cGGCGCCGcGCGACGGGC-CGCCGcCGc -3'
miRNA:   3'- -CUGCGGC-UGCUGCUCGaGCGGCuGCu -5'
23849 5' -59.1 NC_005261.1 + 50635 0.78 0.218515
Target:  5'- cACGCgGGCGGCGGGguggCGCCGGCGAa -3'
miRNA:   3'- cUGCGgCUGCUGCUCga--GCGGCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 87964 0.77 0.225919
Target:  5'- -cCGCCGGCGGCGGGCUcgguauuuaaccucgCGCCGGCu- -3'
miRNA:   3'- cuGCGGCUGCUGCUCGA---------------GCGGCUGcu -5'
23849 5' -59.1 NC_005261.1 + 75855 0.79 0.171471
Target:  5'- cGGCGCCGACGGCG-GCcccgacggCGCCGugGGc -3'
miRNA:   3'- -CUGCGGCUGCUGCuCGa-------GCGGCugCU- -5'
23849 5' -59.1 NC_005261.1 + 106756 0.79 0.171471
Target:  5'- cGCGCCcGCcACGAGCUUGCCGGCGGc -3'
miRNA:   3'- cUGCGGcUGcUGCUCGAGCGGCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 120228 0.8 0.147782
Target:  5'- aGCGCCGACGugGAGCgccgcuUCGCCG-CGGc -3'
miRNA:   3'- cUGCGGCUGCugCUCG------AGCGGCuGCU- -5'
23849 5' -59.1 NC_005261.1 + 106620 0.84 0.082239
Target:  5'- aGACGCCGcggagccgcGCGACGAGCUCGgCGACGu -3'
miRNA:   3'- -CUGCGGC---------UGCUGCUCGAGCgGCUGCu -5'
23849 5' -59.1 NC_005261.1 + 119018 0.84 0.088875
Target:  5'- cGCGCCGACGaAUGAGCggacgUCGCCGACGGu -3'
miRNA:   3'- cUGCGGCUGC-UGCUCG-----AGCGGCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 9518 0.83 0.091198
Target:  5'- -cCGCCGACGAUccugGAGcCUCGCCGACGAc -3'
miRNA:   3'- cuGCGGCUGCUG----CUC-GAGCGGCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 88192 0.81 0.13036
Target:  5'- cGGCGCCGGCGagGCGGGCcgCGCCGGCa- -3'
miRNA:   3'- -CUGCGGCUGC--UGCUCGa-GCGGCUGcu -5'
23849 5' -59.1 NC_005261.1 + 37429 0.81 0.140572
Target:  5'- uACGCCGugGcgcGCGGGCUCGCCGAaGAu -3'
miRNA:   3'- cUGCGGCugC---UGCUCGAGCGGCUgCU- -5'
23849 5' -59.1 NC_005261.1 + 12772 0.81 0.140572
Target:  5'- cGGCGgUGGCGGgGGGCUCGUCGGCGAg -3'
miRNA:   3'- -CUGCgGCUGCUgCUCGAGCGGCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 59394 0.8 0.144135
Target:  5'- cGGCGCCGAgccCGGGCUCGCCGGCGc -3'
miRNA:   3'- -CUGCGGCUgcuGCUCGAGCGGCUGCu -5'
23849 5' -59.1 NC_005261.1 + 2391 0.8 0.147782
Target:  5'- cGCGCUGGCGGCGAGCgCGCCcGCGGg -3'
miRNA:   3'- cUGCGGCUGCUGCUCGaGCGGcUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.