miRNA display CGI


Results 1 - 20 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23849 5' -59.1 NC_005261.1 + 84961 0.65 0.812673
Target:  5'- -cCGCCGagGCGuCGGGCgcguccgcgaugCGCCGGCGc -3'
miRNA:   3'- cuGCGGC--UGCuGCUCGa-----------GCGGCUGCu -5'
23849 5' -59.1 NC_005261.1 + 73671 0.66 0.779361
Target:  5'- cGACGCgGAgGGCGGGCgcggGCUuaGACGGc -3'
miRNA:   3'- -CUGCGgCUgCUGCUCGag--CGG--CUGCU- -5'
23849 5' -59.1 NC_005261.1 + 34349 0.66 0.779361
Target:  5'- gGGCgGCCGACGGggcCGGGCgcCGCgCGGCGc -3'
miRNA:   3'- -CUG-CGGCUGCU---GCUCGa-GCG-GCUGCu -5'
23849 5' -59.1 NC_005261.1 + 97798 0.66 0.779361
Target:  5'- --gGCCGGCGACc-GUcCGCCGGCGc -3'
miRNA:   3'- cugCGGCUGCUGcuCGaGCGGCUGCu -5'
23849 5' -59.1 NC_005261.1 + 79418 0.66 0.770277
Target:  5'- aGGC-CCGuguCGGCGAGCUCGgCGcGCGu -3'
miRNA:   3'- -CUGcGGCu--GCUGCUCGAGCgGC-UGCu -5'
23849 5' -59.1 NC_005261.1 + 84365 0.66 0.779361
Target:  5'- aGGCGCCGcCcGCGGGCUCgGCCu-CGGc -3'
miRNA:   3'- -CUGCGGCuGcUGCUCGAG-CGGcuGCU- -5'
23849 5' -59.1 NC_005261.1 + 97852 0.66 0.770277
Target:  5'- gGGCGCCGccGCGGC-AGCgcgGCCGGCa- -3'
miRNA:   3'- -CUGCGGC--UGCUGcUCGag-CGGCUGcu -5'
23849 5' -59.1 NC_005261.1 + 105489 0.66 0.770277
Target:  5'- cGCGCgGGCccCGAGCcCGCCGAgaCGAa -3'
miRNA:   3'- cUGCGgCUGcuGCUCGaGCGGCU--GCU- -5'
23849 5' -59.1 NC_005261.1 + 102963 0.66 0.770277
Target:  5'- -cCGCgGGCGccGCGGGCUCcGCCGccgcgcGCGAc -3'
miRNA:   3'- cuGCGgCUGC--UGCUCGAG-CGGC------UGCU- -5'
23849 5' -59.1 NC_005261.1 + 58996 0.66 0.770277
Target:  5'- gGGCGgCGguGCGcCGGGCUCGCCcaGCGGc -3'
miRNA:   3'- -CUGCgGC--UGCuGCUCGAGCGGc-UGCU- -5'
23849 5' -59.1 NC_005261.1 + 120002 0.66 0.770277
Target:  5'- gGGCGCCGGCuACGcGGCcgugugccgCGCCGcCGAg -3'
miRNA:   3'- -CUGCGGCUGcUGC-UCGa--------GCGGCuGCU- -5'
23849 5' -59.1 NC_005261.1 + 81371 0.66 0.770277
Target:  5'- gGGCGCCGggcucgcuggggGCGcCGGGCUC-CCGGCc- -3'
miRNA:   3'- -CUGCGGC------------UGCuGCUCGAGcGGCUGcu -5'
23849 5' -59.1 NC_005261.1 + 87130 0.66 0.770277
Target:  5'- --gGCCG-CGgguacGCGAgcuGCUCGCCGAUGGc -3'
miRNA:   3'- cugCGGCuGC-----UGCU---CGAGCGGCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 112056 0.66 0.770277
Target:  5'- --aGCCGGCcuucgGGCGuGCccUCGUCGGCGAg -3'
miRNA:   3'- cugCGGCUG-----CUGCuCG--AGCGGCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 31207 0.66 0.779361
Target:  5'- cGAgGUCG-CGGCGcGGCUCGCgGACc- -3'
miRNA:   3'- -CUgCGGCuGCUGC-UCGAGCGgCUGcu -5'
23849 5' -59.1 NC_005261.1 + 5119 0.66 0.779361
Target:  5'- --aGCuCGGCG-CGGGCggccCGCCGGCGc -3'
miRNA:   3'- cugCG-GCUGCuGCUCGa---GCGGCUGCu -5'
23849 5' -59.1 NC_005261.1 + 57658 0.66 0.770277
Target:  5'- cACGCCcccgaGACugcGCGAGCgccaGCCGGCGGg -3'
miRNA:   3'- cUGCGG-----CUGc--UGCUCGag--CGGCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 57789 0.66 0.777554
Target:  5'- cGGCGUCGcGCGGCGGGCgCGCgaaggccgugaaGGCGAa -3'
miRNA:   3'- -CUGCGGC-UGCUGCUCGaGCGg-----------CUGCU- -5'
23849 5' -59.1 NC_005261.1 + 134569 0.66 0.770277
Target:  5'- cGGCGCCG-CGGCugcgcaGGGCggGCCuGGCGAg -3'
miRNA:   3'- -CUGCGGCuGCUG------CUCGagCGG-CUGCU- -5'
23849 5' -59.1 NC_005261.1 + 10902 0.66 0.770277
Target:  5'- cGGCGgCGGCGGC-AGCgccgcCGCCGGCc- -3'
miRNA:   3'- -CUGCgGCUGCUGcUCGa----GCGGCUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.