miRNA display CGI


Results 1 - 20 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23849 5' -59.1 NC_005261.1 + 379 0.66 0.78832
Target:  5'- cGGCGgUGGCGGCG-GCggCGgCGGCGGc -3'
miRNA:   3'- -CUGCgGCUGCUGCuCGa-GCgGCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 1114 0.72 0.452401
Target:  5'- gGACGCgGACGACGAggaggacgcggaGgaCGCgGACGAg -3'
miRNA:   3'- -CUGCGgCUGCUGCU------------CgaGCGgCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 1282 0.69 0.614795
Target:  5'- cGGCGCCcaGGcCGGCgGGGCucccgUCGCCGGCGGc -3'
miRNA:   3'- -CUGCGG--CU-GCUG-CUCG-----AGCGGCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 1782 0.69 0.594941
Target:  5'- uGGCGCCG-CGGCaGAGC-CGCagCGGCGGc -3'
miRNA:   3'- -CUGCGGCuGCUG-CUCGaGCG--GCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 2262 0.67 0.73286
Target:  5'- -cCGCCGGCGcuCGucCUCGCCgGGCGGc -3'
miRNA:   3'- cuGCGGCUGCu-GCucGAGCGG-CUGCU- -5'
23849 5' -59.1 NC_005261.1 + 2391 0.8 0.147782
Target:  5'- cGCGCUGGCGGCGAGCgCGCCcGCGGg -3'
miRNA:   3'- cUGCGGCUGCUGCUCGaGCGGcUGCU- -5'
23849 5' -59.1 NC_005261.1 + 2608 0.69 0.594941
Target:  5'- -cCGUCGGCGGCgGGGC-CGCCgGGCGGc -3'
miRNA:   3'- cuGCGGCUGCUG-CUCGaGCGG-CUGCU- -5'
23849 5' -59.1 NC_005261.1 + 2682 0.68 0.654595
Target:  5'- gGAC-CCGGCGGCGcgccGGCUUuugGCCGGCGc -3'
miRNA:   3'- -CUGcGGCUGCUGC----UCGAG---CGGCUGCu -5'
23849 5' -59.1 NC_005261.1 + 2744 0.71 0.488831
Target:  5'- uGCGCCG-CGGCGGGC-CGUcgCGGCGGg -3'
miRNA:   3'- cUGCGGCuGCUGCUCGaGCG--GCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 2780 0.68 0.674423
Target:  5'- -cCGCCccCGAgGGGCUgcCGCCGGCGGc -3'
miRNA:   3'- cuGCGGcuGCUgCUCGA--GCGGCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 3342 0.69 0.594941
Target:  5'- cGCGCCG-CGGCGcccGGCgCGCCGGCc- -3'
miRNA:   3'- cUGCGGCuGCUGC---UCGaGCGGCUGcu -5'
23849 5' -59.1 NC_005261.1 + 3464 0.67 0.761076
Target:  5'- cGCGCCGcGCGuCGAGUaccgCGCCaGCGGg -3'
miRNA:   3'- cUGCGGC-UGCuGCUCGa---GCGGcUGCU- -5'
23849 5' -59.1 NC_005261.1 + 3839 0.76 0.251755
Target:  5'- gGGCGCUGGCGGC-AGCggCGCCGGCGc -3'
miRNA:   3'- -CUGCGGCUGCUGcUCGa-GCGGCUGCu -5'
23849 5' -59.1 NC_005261.1 + 3904 0.66 0.78832
Target:  5'- cGGCGCgGGCGccCGcGC-CGCCGGCGc -3'
miRNA:   3'- -CUGCGgCUGCu-GCuCGaGCGGCUGCu -5'
23849 5' -59.1 NC_005261.1 + 4483 0.67 0.751768
Target:  5'- cGGCGCCG-CGGCGuAGCcugCGCgGGCc- -3'
miRNA:   3'- -CUGCGGCuGCUGC-UCGa--GCGgCUGcu -5'
23849 5' -59.1 NC_005261.1 + 4529 0.73 0.409037
Target:  5'- gGGCGCCG-CGGCGAGggCGCCGGg-- -3'
miRNA:   3'- -CUGCGGCuGCUGCUCgaGCGGCUgcu -5'
23849 5' -59.1 NC_005261.1 + 5119 0.66 0.779361
Target:  5'- --aGCuCGGCG-CGGGCggccCGCCGGCGc -3'
miRNA:   3'- cugCG-GCUGCuGCUCGa---GCGGCUGCu -5'
23849 5' -59.1 NC_005261.1 + 5914 0.72 0.434749
Target:  5'- --gGCCGGCuGGCuAGCUCGCuCGACGGc -3'
miRNA:   3'- cugCGGCUG-CUGcUCGAGCG-GCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 9332 0.76 0.261296
Target:  5'- -cCGCCGcCGACGAGCccaccgggagcacCGCCGACGAu -3'
miRNA:   3'- cuGCGGCuGCUGCUCGa------------GCGGCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 9518 0.83 0.091198
Target:  5'- -cCGCCGACGAUccugGAGcCUCGCCGACGAc -3'
miRNA:   3'- cuGCGGCUGCUG----CUC-GAGCGGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.