miRNA display CGI


Results 1 - 20 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23849 5' -59.1 NC_005261.1 + 138050 0.66 0.78832
Target:  5'- cGGCGgUGGCGGCG-GCggCGgCGGCGGc -3'
miRNA:   3'- -CUGCgGCUGCUGCuCGa-GCgGCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 136594 0.68 0.664522
Target:  5'- aGACGCCcggcgcaGCGugGAGCggcgcgcgcgCGCCGAgGGc -3'
miRNA:   3'- -CUGCGGc------UGCugCUCGa---------GCGGCUgCU- -5'
23849 5' -59.1 NC_005261.1 + 136481 0.67 0.742359
Target:  5'- cGCGCgGGCagcaGCGAGCagcucggCGCCGACGc -3'
miRNA:   3'- cUGCGgCUGc---UGCUCGa------GCGGCUGCu -5'
23849 5' -59.1 NC_005261.1 + 135659 0.67 0.742359
Target:  5'- gGGCGCgGGCGGCccucgcucgagGAGCUcugCGCCGcGCGGc -3'
miRNA:   3'- -CUGCGgCUGCUG-----------CUCGA---GCGGC-UGCU- -5'
23849 5' -59.1 NC_005261.1 + 135151 0.67 0.721352
Target:  5'- cGACGCCGccuccgcccgcuCGAUcggGAGCUCGCUG-CGGc -3'
miRNA:   3'- -CUGCGGCu-----------GCUG---CUCGAGCGGCuGCU- -5'
23849 5' -59.1 NC_005261.1 + 135069 0.73 0.383487
Target:  5'- -cCGCCGcuuuccgGCGGCGGGCUCGCggccCGGCGGc -3'
miRNA:   3'- cuGCGGC-------UGCUGCUCGAGCG----GCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 135000 0.66 0.78832
Target:  5'- gGGCGCCccuggcGCGGCGGGCcCGCacgcggccgcggCGGCGAg -3'
miRNA:   3'- -CUGCGGc-----UGCUGCUCGaGCG------------GCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 134949 0.76 0.282545
Target:  5'- --aGCCGAUgGGCGAGggCGCCGGCGAc -3'
miRNA:   3'- cugCGGCUG-CUGCUCgaGCGGCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 134569 0.66 0.770277
Target:  5'- cGGCGCCG-CGGCugcgcaGGGCggGCCuGGCGAg -3'
miRNA:   3'- -CUGCGGCuGCUG------CUCGagCGG-CUGCU- -5'
23849 5' -59.1 NC_005261.1 + 134357 0.7 0.55559
Target:  5'- cGCGCCGccgcGCGGgGGGCggcgcCGCUGGCGAc -3'
miRNA:   3'- cUGCGGC----UGCUgCUCGa----GCGGCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 134102 0.79 0.171471
Target:  5'- cGCGCCGGCG-CGcGCUCGCCGcCGAc -3'
miRNA:   3'- cUGCGGCUGCuGCuCGAGCGGCuGCU- -5'
23849 5' -59.1 NC_005261.1 + 133623 0.72 0.426074
Target:  5'- uGGCGCUGugGGcCGcGCUCGCCGcgccgcugcGCGAg -3'
miRNA:   3'- -CUGCGGCugCU-GCuCGAGCGGC---------UGCU- -5'
23849 5' -59.1 NC_005261.1 + 133281 0.66 0.779361
Target:  5'- gGGCGCCGGCGcccgccuCGuGGC-CGCCaagGACGAc -3'
miRNA:   3'- -CUGCGGCUGCu------GC-UCGaGCGG---CUGCU- -5'
23849 5' -59.1 NC_005261.1 + 133188 0.79 0.171471
Target:  5'- cGGCGCCGuCGAgGAGUucaUCGCCGACGc -3'
miRNA:   3'- -CUGCGGCuGCUgCUCG---AGCGGCUGCu -5'
23849 5' -59.1 NC_005261.1 + 133160 0.69 0.604858
Target:  5'- -cCGCCGuCGGCGucGC-CGCCGACa- -3'
miRNA:   3'- cuGCGGCuGCUGCu-CGaGCGGCUGcu -5'
23849 5' -59.1 NC_005261.1 + 133062 0.66 0.797146
Target:  5'- cGGCGuuGGCGGCGAGUaCGUCaGCu- -3'
miRNA:   3'- -CUGCggCUGCUGCUCGaGCGGcUGcu -5'
23849 5' -59.1 NC_005261.1 + 132958 0.68 0.654595
Target:  5'- uGCGCCGACGugGccGCcuucgUCGCCGcgcaccGCGAc -3'
miRNA:   3'- cUGCGGCUGCugCu-CG-----AGCGGC------UGCU- -5'
23849 5' -59.1 NC_005261.1 + 132625 0.72 0.461372
Target:  5'- gGGCGCUGGCGcCGAGgaCGCgGGCGc -3'
miRNA:   3'- -CUGCGGCUGCuGCUCgaGCGgCUGCu -5'
23849 5' -59.1 NC_005261.1 + 132361 0.72 0.461372
Target:  5'- -cCGCCG-CGGCGcGCUCGCCGcgcucGCGGc -3'
miRNA:   3'- cuGCGGCuGCUGCuCGAGCGGC-----UGCU- -5'
23849 5' -59.1 NC_005261.1 + 132103 0.67 0.761076
Target:  5'- gGGCgGCCG-CGACGcGCUCGUgGAgCGGg -3'
miRNA:   3'- -CUG-CGGCuGCUGCuCGAGCGgCU-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.