Results 1 - 20 of 314 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23849 | 5' | -59.1 | NC_005261.1 | + | 87410 | 0.9 | 0.035456 |
Target: 5'- cGGCGCCGuCGACGGGCgCGCCGGCGAa -3' miRNA: 3'- -CUGCGGCuGCUGCUCGaGCGGCUGCU- -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 106620 | 0.84 | 0.082239 |
Target: 5'- aGACGCCGcggagccgcGCGACGAGCUCGgCGACGu -3' miRNA: 3'- -CUGCGGC---------UGCUGCUCGAGCgGCUGCu -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 119018 | 0.84 | 0.088875 |
Target: 5'- cGCGCCGACGaAUGAGCggacgUCGCCGACGGu -3' miRNA: 3'- cUGCGGCUGC-UGCUCG-----AGCGGCUGCU- -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 9518 | 0.83 | 0.091198 |
Target: 5'- -cCGCCGACGAUccugGAGcCUCGCCGACGAc -3' miRNA: 3'- cuGCGGCUGCUG----CUC-GAGCGGCUGCU- -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 88192 | 0.81 | 0.13036 |
Target: 5'- cGGCGCCGGCGagGCGGGCcgCGCCGGCa- -3' miRNA: 3'- -CUGCGGCUGC--UGCUCGa-GCGGCUGcu -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 12772 | 0.81 | 0.140572 |
Target: 5'- cGGCGgUGGCGGgGGGCUCGUCGGCGAg -3' miRNA: 3'- -CUGCgGCUGCUgCUCGAGCGGCUGCU- -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 37429 | 0.81 | 0.140572 |
Target: 5'- uACGCCGugGcgcGCGGGCUCGCCGAaGAu -3' miRNA: 3'- cUGCGGCugC---UGCUCGAGCGGCUgCU- -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 59394 | 0.8 | 0.144135 |
Target: 5'- cGGCGCCGAgccCGGGCUCGCCGGCGc -3' miRNA: 3'- -CUGCGGCUgcuGCUCGAGCGGCUGCu -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 2391 | 0.8 | 0.147782 |
Target: 5'- cGCGCUGGCGGCGAGCgCGCCcGCGGg -3' miRNA: 3'- cUGCGGCUGCUGCUCGaGCGGcUGCU- -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 120228 | 0.8 | 0.147782 |
Target: 5'- aGCGCCGACGugGAGCgccgcuUCGCCG-CGGc -3' miRNA: 3'- cUGCGGCUGCugCUCG------AGCGGCuGCU- -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 134102 | 0.79 | 0.171471 |
Target: 5'- cGCGCCGGCG-CGcGCUCGCCGcCGAc -3' miRNA: 3'- cUGCGGCUGCuGCuCGAGCGGCuGCU- -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 133188 | 0.79 | 0.171471 |
Target: 5'- cGGCGCCGuCGAgGAGUucaUCGCCGACGc -3' miRNA: 3'- -CUGCGGCuGCUgCUCG---AGCGGCUGCu -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 75855 | 0.79 | 0.171471 |
Target: 5'- cGGCGCCGACGGCG-GCcccgacggCGCCGugGGc -3' miRNA: 3'- -CUGCGGCUGCUGCuCGa-------GCGGCugCU- -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 106756 | 0.79 | 0.171471 |
Target: 5'- cGCGCCcGCcACGAGCUUGCCGGCGGc -3' miRNA: 3'- cUGCGGcUGcUGCUCGAGCGGCUGCU- -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 70814 | 0.78 | 0.193746 |
Target: 5'- cGCGCCGGCGGCcccGGGCgCGCCGGCGc -3' miRNA: 3'- cUGCGGCUGCUG---CUCGaGCGGCUGCu -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 69506 | 0.78 | 0.203345 |
Target: 5'- uACGCCGGCGGCGGGCUgccggaGCUGGCGc -3' miRNA: 3'- cUGCGGCUGCUGCUCGAg-----CGGCUGCu -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 88810 | 0.78 | 0.207797 |
Target: 5'- gGACGCCGGCGGCGgggcggcGGCgcgCGCCGGCc- -3' miRNA: 3'- -CUGCGGCUGCUGC-------UCGa--GCGGCUGcu -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 29246 | 0.78 | 0.208297 |
Target: 5'- cGGCGCCGcGCGACGGGC-CGCCGcCGc -3' miRNA: 3'- -CUGCGGC-UGCUGCUCGaGCGGCuGCu -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 50635 | 0.78 | 0.218515 |
Target: 5'- cACGCgGGCGGCGGGguggCGCCGGCGAa -3' miRNA: 3'- cUGCGgCUGCUGCUCga--GCGGCUGCU- -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 87964 | 0.77 | 0.225919 |
Target: 5'- -cCGCCGGCGGCGGGCUcgguauuuaaccucgCGCCGGCu- -3' miRNA: 3'- cuGCGGCUGCUGCUCGA---------------GCGGCUGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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