miRNA display CGI


Results 21 - 40 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23849 5' -59.1 NC_005261.1 + 111441 0.77 0.234641
Target:  5'- aGACGgaCGAcCGGCGAGCcgggCGCCGGCGAg -3'
miRNA:   3'- -CUGCg-GCU-GCUGCUCGa---GCGGCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 3839 0.76 0.251755
Target:  5'- gGGCGCUGGCGGC-AGCggCGCCGGCGc -3'
miRNA:   3'- -CUGCGGCUGCUGcUCGa-GCGGCUGCu -5'
23849 5' -59.1 NC_005261.1 + 9332 0.76 0.261296
Target:  5'- -cCGCCGcCGACGAGCccaccgggagcacCGCCGACGAu -3'
miRNA:   3'- cuGCGGCuGCUGCUCGa------------GCGGCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 88565 0.76 0.263727
Target:  5'- aGCGCCGGCGACGcgucccGCuUCGCCGcCGAg -3'
miRNA:   3'- cUGCGGCUGCUGCu-----CG-AGCGGCuGCU- -5'
23849 5' -59.1 NC_005261.1 + 43409 0.76 0.269884
Target:  5'- aGGCGCCGGgGGCGGccuccGC-CGCCGGCGGg -3'
miRNA:   3'- -CUGCGGCUgCUGCU-----CGaGCGGCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 76451 0.76 0.282545
Target:  5'- cGCGcCCGACGGCGAcgGCggCGCCGGCGc -3'
miRNA:   3'- cUGC-GGCUGCUGCU--CGa-GCGGCUGCu -5'
23849 5' -59.1 NC_005261.1 + 134949 0.76 0.282545
Target:  5'- --aGCCGAUgGGCGAGggCGCCGGCGAc -3'
miRNA:   3'- cugCGGCUG-CUGCUCgaGCGGCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 40676 0.75 0.28905
Target:  5'- cGACGCCGuCGGgGAGCcggCGCCGGCc- -3'
miRNA:   3'- -CUGCGGCuGCUgCUCGa--GCGGCUGcu -5'
23849 5' -59.1 NC_005261.1 + 68699 0.75 0.28905
Target:  5'- cGGCGCgGACGACG-GCggCGCCGGCc- -3'
miRNA:   3'- -CUGCGgCUGCUGCuCGa-GCGGCUGcu -5'
23849 5' -59.1 NC_005261.1 + 69263 0.75 0.28905
Target:  5'- cGCGCCGAcccCGGCGAGCcgcccgCGCCGACc- -3'
miRNA:   3'- cUGCGGCU---GCUGCUCGa-----GCGGCUGcu -5'
23849 5' -59.1 NC_005261.1 + 82902 0.75 0.293673
Target:  5'- cGCGCCGACGAgGAcauccagaacugcaGCUCGCUGACc- -3'
miRNA:   3'- cUGCGGCUGCUgCU--------------CGAGCGGCUGcu -5'
23849 5' -59.1 NC_005261.1 + 47340 0.75 0.295672
Target:  5'- cGCGUCGGCGACGAcGCagucgaaGCCGACGGg -3'
miRNA:   3'- cUGCGGCUGCUGCU-CGag-----CGGCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 11944 0.75 0.295672
Target:  5'- cGCGCCG-CGGCG-GCUCGCcCGGCGc -3'
miRNA:   3'- cUGCGGCuGCUGCuCGAGCG-GCUGCu -5'
23849 5' -59.1 NC_005261.1 + 110615 0.75 0.302411
Target:  5'- gGACGCCGagcuGCGGCugGAGCcCGCCGGCGu -3'
miRNA:   3'- -CUGCGGC----UGCUG--CUCGaGCGGCUGCu -5'
23849 5' -59.1 NC_005261.1 + 31434 0.75 0.309268
Target:  5'- aGGCGCUGGCGGCGccgcccGGCgaggacgagCGCCGGCGGc -3'
miRNA:   3'- -CUGCGGCUGCUGC------UCGa--------GCGGCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 59909 0.75 0.316243
Target:  5'- aGGCGaaGAgcagguCGACGAGCUCGCCGuCGGc -3'
miRNA:   3'- -CUGCggCU------GCUGCUCGAGCGGCuGCU- -5'
23849 5' -59.1 NC_005261.1 + 91728 0.75 0.316243
Target:  5'- -uCGCCG-CGGCGGGCUucgcggcgcucaCGCCGGCGGc -3'
miRNA:   3'- cuGCGGCuGCUGCUCGA------------GCGGCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 29805 0.75 0.321196
Target:  5'- cGGCGCCGGCGGCGcgggcgcccgcgccGcGCUCGCCGAg-- -3'
miRNA:   3'- -CUGCGGCUGCUGC--------------U-CGAGCGGCUgcu -5'
23849 5' -59.1 NC_005261.1 + 94747 0.74 0.328372
Target:  5'- cGACGCCGACGugGAGaucugguucgaggaCguggCGCCGcGCGAg -3'
miRNA:   3'- -CUGCGGCUGCugCUC--------------Ga---GCGGC-UGCU- -5'
23849 5' -59.1 NC_005261.1 + 121715 0.74 0.330547
Target:  5'- aGACGCCGACGGCGGGggagaaGCCGAgGu -3'
miRNA:   3'- -CUGCGGCUGCUGCUCgag---CGGCUgCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.