miRNA display CGI


Results 21 - 40 of 314 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23849 5' -59.1 NC_005261.1 + 41050 0.66 0.797146
Target:  5'- cGGCGCCGGCcucaGAGC-CGgCGGCGc -3'
miRNA:   3'- -CUGCGGCUGcug-CUCGaGCgGCUGCu -5'
23849 5' -59.1 NC_005261.1 + 62293 0.66 0.797146
Target:  5'- cACGUCGGCGcCGcGCgggCGCgCGGCGGc -3'
miRNA:   3'- cUGCGGCUGCuGCuCGa--GCG-GCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 23835 0.66 0.797146
Target:  5'- --gGCCGGCuagGGUGGGCUCGCCGGgGc -3'
miRNA:   3'- cugCGGCUG---CUGCUCGAGCGGCUgCu -5'
23849 5' -59.1 NC_005261.1 + 23778 0.66 0.797146
Target:  5'- --gGCCGGCuagGGUGGGCUCGCCGGgGc -3'
miRNA:   3'- cugCGGCUG---CUGCUCGAGCGGCUgCu -5'
23849 5' -59.1 NC_005261.1 + 97741 0.66 0.797146
Target:  5'- --gGCUGGCaggggcggGGCGGGCUCGgCGGCGc -3'
miRNA:   3'- cugCGGCUG--------CUGCUCGAGCgGCUGCu -5'
23849 5' -59.1 NC_005261.1 + 70333 0.66 0.797146
Target:  5'- aGGCGCaCG-CGuCGAGCggGCCGGgGAc -3'
miRNA:   3'- -CUGCG-GCuGCuGCUCGagCGGCUgCU- -5'
23849 5' -59.1 NC_005261.1 + 117613 0.66 0.797146
Target:  5'- uGACGaCGACGACGgaAGCgaccgCGCCGGg-- -3'
miRNA:   3'- -CUGCgGCUGCUGC--UCGa----GCGGCUgcu -5'
23849 5' -59.1 NC_005261.1 + 68584 0.66 0.797146
Target:  5'- -cCGCCGA-GGCGGGCcgCgggagcgggGCCGACGGc -3'
miRNA:   3'- cuGCGGCUgCUGCUCGa-G---------CGGCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 29870 0.66 0.797146
Target:  5'- cGGCGCCGGCGcCGcuGC-CGCCaGCGc -3'
miRNA:   3'- -CUGCGGCUGCuGCu-CGaGCGGcUGCu -5'
23849 5' -59.1 NC_005261.1 + 59865 0.66 0.797146
Target:  5'- gGACGUCGGCcucguACGGGU--GCCGGCGGg -3'
miRNA:   3'- -CUGCGGCUGc----UGCUCGagCGGCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 133062 0.66 0.797146
Target:  5'- cGGCGuuGGCGGCGAGUaCGUCaGCu- -3'
miRNA:   3'- -CUGCggCUGCUGCUCGaGCGGcUGcu -5'
23849 5' -59.1 NC_005261.1 + 62526 0.66 0.797146
Target:  5'- aGGCGCCGcGCGGCauGGGCcccaCGCCGA-GAg -3'
miRNA:   3'- -CUGCGGC-UGCUG--CUCGa---GCGGCUgCU- -5'
23849 5' -59.1 NC_005261.1 + 35689 0.66 0.794513
Target:  5'- -cCGCCGGCGagccccggugggccGgGGGCUCGgUGGCGGc -3'
miRNA:   3'- cuGCGGCUGC--------------UgCUCGAGCgGCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 46988 0.66 0.78832
Target:  5'- -cCGCCGGCaGCGcGCgccgCGCCGccGCGAu -3'
miRNA:   3'- cuGCGGCUGcUGCuCGa---GCGGC--UGCU- -5'
23849 5' -59.1 NC_005261.1 + 78629 0.66 0.78832
Target:  5'- gGGCGCCaGGucCGcCGAGUUCGCgCGAgCGAg -3'
miRNA:   3'- -CUGCGG-CU--GCuGCUCGAGCG-GCU-GCU- -5'
23849 5' -59.1 NC_005261.1 + 99801 0.66 0.78832
Target:  5'- cGGCGCgGAUGGCGAacaGCgCGCCGuccgcCGGg -3'
miRNA:   3'- -CUGCGgCUGCUGCU---CGaGCGGCu----GCU- -5'
23849 5' -59.1 NC_005261.1 + 63016 0.66 0.78832
Target:  5'- cGCGCCcGCG-CGGGCgccggCGCCcgcGGCGAg -3'
miRNA:   3'- cUGCGGcUGCuGCUCGa----GCGG---CUGCU- -5'
23849 5' -59.1 NC_005261.1 + 118697 0.66 0.78832
Target:  5'- cACGCgCGGCGugGuccugcucAGCgUCGCgGGCGGg -3'
miRNA:   3'- cUGCG-GCUGCugC--------UCG-AGCGgCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 135000 0.66 0.78832
Target:  5'- gGGCGCCccuggcGCGGCGGGCcCGCacgcggccgcggCGGCGAg -3'
miRNA:   3'- -CUGCGGc-----UGCUGCUCGaGCG------------GCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 379 0.66 0.78832
Target:  5'- cGGCGgUGGCGGCG-GCggCGgCGGCGGc -3'
miRNA:   3'- -CUGCgGCUGCUGCuCGa-GCgGCUGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.