miRNA display CGI


Results 21 - 40 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23849 5' -59.1 NC_005261.1 + 10902 0.66 0.770277
Target:  5'- cGGCGgCGGCGGC-AGCgccgcCGCCGGCc- -3'
miRNA:   3'- -CUGCgGCUGCUGcUCGa----GCGGCUGcu -5'
23849 5' -59.1 NC_005261.1 + 11103 0.67 0.73286
Target:  5'- gGACG-CGACggGACGAGaugCGCCGGCa- -3'
miRNA:   3'- -CUGCgGCUG--CUGCUCga-GCGGCUGcu -5'
23849 5' -59.1 NC_005261.1 + 11944 0.75 0.295672
Target:  5'- cGCGCCG-CGGCG-GCUCGCcCGGCGc -3'
miRNA:   3'- cUGCGGCuGCUGCuCGAGCG-GCUGCu -5'
23849 5' -59.1 NC_005261.1 + 12300 0.67 0.751768
Target:  5'- -cCGCCG-CGggcACGGGCgcguaGCCGGCGGg -3'
miRNA:   3'- cuGCGGCuGC---UGCUCGag---CGGCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 12772 0.81 0.140572
Target:  5'- cGGCGgUGGCGGgGGGCUCGUCGGCGAg -3'
miRNA:   3'- -CUGCgGCUGCUgCUCGAGCGGCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 13093 0.69 0.634699
Target:  5'- --gGCgGGCGGCGGGCUCggcucgggggcGUCGGCGGc -3'
miRNA:   3'- cugCGgCUGCUGCUCGAG-----------CGGCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 13491 0.67 0.73286
Target:  5'- aGAUGCgGACGAgCGcGCagUCGCCGGCc- -3'
miRNA:   3'- -CUGCGgCUGCU-GCuCG--AGCGGCUGcu -5'
23849 5' -59.1 NC_005261.1 + 15953 0.66 0.805832
Target:  5'- --aGCCGGgGGCGAGUg-GCgGGCGGg -3'
miRNA:   3'- cugCGGCUgCUGCUCGagCGgCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 16718 0.7 0.575189
Target:  5'- cGCGCCGGuacuggcccuCGGCGAGCcgCGCgGGCGc -3'
miRNA:   3'- cUGCGGCU----------GCUGCUCGa-GCGgCUGCu -5'
23849 5' -59.1 NC_005261.1 + 17113 0.73 0.392431
Target:  5'- cGAUGUaguuguaucgCGGCGGCGGGUaCGCCGGCGGg -3'
miRNA:   3'- -CUGCG----------GCUGCUGCUCGaGCGGCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 17649 0.66 0.805832
Target:  5'- cGAgGCCGAUGAgGAugGCgCGCCGcgugGCGGg -3'
miRNA:   3'- -CUgCGGCUGCUgCU--CGaGCGGC----UGCU- -5'
23849 5' -59.1 NC_005261.1 + 17913 0.69 0.613801
Target:  5'- cGGCGCCGauuagcaGCGAguCGGGCcCGCUGGCGu -3'
miRNA:   3'- -CUGCGGC-------UGCU--GCUCGaGCGGCUGCu -5'
23849 5' -59.1 NC_005261.1 + 19553 0.68 0.7039
Target:  5'- aGCGCCGugGG-GAGCgccaGCgGGCGGu -3'
miRNA:   3'- cUGCGGCugCUgCUCGag--CGgCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 20554 0.74 0.345322
Target:  5'- gGACG-UGGCGGCGGGCUgcgcagcggCGCCGGCGGc -3'
miRNA:   3'- -CUGCgGCUGCUGCUCGA---------GCGGCUGCU- -5'
23849 5' -59.1 NC_005261.1 + 21207 0.71 0.526579
Target:  5'- gGACGCuggccccggccgCGACGGCGGGCcCGUCGGCu- -3'
miRNA:   3'- -CUGCG------------GCUGCUGCUCGaGCGGCUGcu -5'
23849 5' -59.1 NC_005261.1 + 21768 0.69 0.634699
Target:  5'- cGCGCCG--GGCGAGC-CGCCG-CGGc -3'
miRNA:   3'- cUGCGGCugCUGCUCGaGCGGCuGCU- -5'
23849 5' -59.1 NC_005261.1 + 21830 0.68 0.694121
Target:  5'- gGGCGCgCGuGCgGGCGGGCUCGCCccgcagcuGACGc -3'
miRNA:   3'- -CUGCG-GC-UG-CUGCUCGAGCGG--------CUGCu -5'
23849 5' -59.1 NC_005261.1 + 22694 0.7 0.536191
Target:  5'- gGACGggcCCGGCGACGAgGC-CGUCGAgGAg -3'
miRNA:   3'- -CUGC---GGCUGCUGCU-CGaGCGGCUgCU- -5'
23849 5' -59.1 NC_005261.1 + 22807 0.68 0.674423
Target:  5'- --gGCCGGCGGCGGcGCUgcCGCCGcCGc -3'
miRNA:   3'- cugCGGCUGCUGCU-CGA--GCGGCuGCu -5'
23849 5' -59.1 NC_005261.1 + 22896 0.69 0.604858
Target:  5'- aACuCCGACGACGAGgaCGacgaggaCGACGAg -3'
miRNA:   3'- cUGcGGCUGCUGCUCgaGCg------GCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.