Results 21 - 40 of 314 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23849 | 5' | -59.1 | NC_005261.1 | + | 97798 | 0.66 | 0.779361 |
Target: 5'- --gGCCGGCGACc-GUcCGCCGGCGc -3' miRNA: 3'- cugCGGCUGCUGcuCGaGCGGCUGCu -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 98189 | 0.66 | 0.779361 |
Target: 5'- -cCGCCGggggcGCGGCGGGCagcgggCGCCGccACGGc -3' miRNA: 3'- cuGCGGC-----UGCUGCUCGa-----GCGGC--UGCU- -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 102963 | 0.66 | 0.770277 |
Target: 5'- -cCGCgGGCGccGCGGGCUCcGCCGccgcgcGCGAc -3' miRNA: 3'- cuGCGgCUGC--UGCUCGAG-CGGC------UGCU- -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 101539 | 0.66 | 0.779361 |
Target: 5'- cGCGCCGccucggccGCcACGAcCUCGCCGAgGAu -3' miRNA: 3'- cUGCGGC--------UGcUGCUcGAGCGGCUgCU- -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 79418 | 0.66 | 0.770277 |
Target: 5'- aGGC-CCGuguCGGCGAGCUCGgCGcGCGu -3' miRNA: 3'- -CUGcGGCu--GCUGCUCGAGCgGC-UGCu -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 5119 | 0.66 | 0.779361 |
Target: 5'- --aGCuCGGCG-CGGGCggccCGCCGGCGc -3' miRNA: 3'- cugCG-GCUGCuGCUCGa---GCGGCUGCu -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 35689 | 0.66 | 0.794513 |
Target: 5'- -cCGCCGGCGagccccggugggccGgGGGCUCGgUGGCGGc -3' miRNA: 3'- cuGCGGCUGC--------------UgCUCGAGCgGCUGCU- -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 58996 | 0.66 | 0.770277 |
Target: 5'- gGGCGgCGguGCGcCGGGCUCGCCcaGCGGc -3' miRNA: 3'- -CUGCgGC--UGCuGCUCGAGCGGc-UGCU- -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 63016 | 0.66 | 0.78832 |
Target: 5'- cGCGCCcGCG-CGGGCgccggCGCCcgcGGCGAg -3' miRNA: 3'- cUGCGGcUGCuGCUCGa----GCGG---CUGCU- -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 55282 | 0.66 | 0.770277 |
Target: 5'- cGCGCCGGaGGCGGGggCGCUGAaGAg -3' miRNA: 3'- cUGCGGCUgCUGCUCgaGCGGCUgCU- -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 10902 | 0.66 | 0.770277 |
Target: 5'- cGGCGgCGGCGGC-AGCgccgcCGCCGGCc- -3' miRNA: 3'- -CUGCgGCUGCUGcUCGa----GCGGCUGcu -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 73671 | 0.66 | 0.779361 |
Target: 5'- cGACGCgGAgGGCGGGCgcggGCUuaGACGGc -3' miRNA: 3'- -CUGCGgCUgCUGCUCGag--CGG--CUGCU- -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 134569 | 0.66 | 0.770277 |
Target: 5'- cGGCGCCG-CGGCugcgcaGGGCggGCCuGGCGAg -3' miRNA: 3'- -CUGCGGCuGCUG------CUCGagCGG-CUGCU- -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 125945 | 0.66 | 0.78832 |
Target: 5'- -cCGCUGGCG-CGGGgUCGCaCGGCa- -3' miRNA: 3'- cuGCGGCUGCuGCUCgAGCG-GCUGcu -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 57789 | 0.66 | 0.777554 |
Target: 5'- cGGCGUCGcGCGGCGGGCgCGCgaaggccgugaaGGCGAa -3' miRNA: 3'- -CUGCGGC-UGCUGCUCGaGCGg-----------CUGCU- -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 87130 | 0.66 | 0.770277 |
Target: 5'- --gGCCG-CGgguacGCGAgcuGCUCGCCGAUGGc -3' miRNA: 3'- cugCGGCuGC-----UGCU---CGAGCGGCUGCU- -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 135000 | 0.66 | 0.78832 |
Target: 5'- gGGCGCCccuggcGCGGCGGGCcCGCacgcggccgcggCGGCGAg -3' miRNA: 3'- -CUGCGGc-----UGCUGCUCGaGCG------------GCUGCU- -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 3904 | 0.66 | 0.78832 |
Target: 5'- cGGCGCgGGCGccCGcGC-CGCCGGCGc -3' miRNA: 3'- -CUGCGgCUGCu-GCuCGaGCGGCUGCu -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 133281 | 0.66 | 0.779361 |
Target: 5'- gGGCGCCGGCGcccgccuCGuGGC-CGCCaagGACGAc -3' miRNA: 3'- -CUGCGGCUGCu------GC-UCGaGCGG---CUGCU- -5' |
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23849 | 5' | -59.1 | NC_005261.1 | + | 62293 | 0.66 | 0.797146 |
Target: 5'- cACGUCGGCGcCGcGCgggCGCgCGGCGGc -3' miRNA: 3'- cUGCGGCUGCuGCuCGa--GCG-GCUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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