miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23857 5' -57.4 NC_005261.1 + 61951 0.66 0.845692
Target:  5'- gCGCGcGCC-GACCgcgUCCCCCAgccgggUCgCCg -3'
miRNA:   3'- -GUGUaCGGuCUGG---AGGGGGUa-----AGgGG- -5'
23857 5' -57.4 NC_005261.1 + 77927 0.66 0.845692
Target:  5'- uGCggGCCGG-CUaCCCCUAcggCCCCg -3'
miRNA:   3'- gUGuaCGGUCuGGaGGGGGUaa-GGGG- -5'
23857 5' -57.4 NC_005261.1 + 73104 0.66 0.845692
Target:  5'- gCACGgcgGCCAGAaagCCCgCGUccgcgcggUCCCCg -3'
miRNA:   3'- -GUGUa--CGGUCUggaGGGgGUA--------AGGGG- -5'
23857 5' -57.4 NC_005261.1 + 38138 0.66 0.837596
Target:  5'- -cCGUGCagaAGaACUUCCCCgGgaCCCCg -3'
miRNA:   3'- guGUACGg--UC-UGGAGGGGgUaaGGGG- -5'
23857 5' -57.4 NC_005261.1 + 22298 0.66 0.837596
Target:  5'- cCGCccGCCuccuCCUCUCUCucuUUCCCCg -3'
miRNA:   3'- -GUGuaCGGucu-GGAGGGGGu--AAGGGG- -5'
23857 5' -57.4 NC_005261.1 + 133977 0.66 0.829313
Target:  5'- cCGCAacgacGCC-GACCUCCUCag--CCCCg -3'
miRNA:   3'- -GUGUa----CGGuCUGGAGGGGguaaGGGG- -5'
23857 5' -57.4 NC_005261.1 + 11130 0.66 0.829313
Target:  5'- aGCGUGCgccGCCUCCgCCGcucUCCCCc -3'
miRNA:   3'- gUGUACGgucUGGAGGgGGUa--AGGGG- -5'
23857 5' -57.4 NC_005261.1 + 11573 0.66 0.829313
Target:  5'- -cCAUGCCc--CUUCCCCCc--CCCCg -3'
miRNA:   3'- guGUACGGucuGGAGGGGGuaaGGGG- -5'
23857 5' -57.4 NC_005261.1 + 3239 0.66 0.828476
Target:  5'- ----gGCCccGGCCUccucgucCCCCCcgUCCCCc -3'
miRNA:   3'- guguaCGGu-CUGGA-------GGGGGuaAGGGG- -5'
23857 5' -57.4 NC_005261.1 + 105020 0.66 0.828476
Target:  5'- ----cGCCAGGgcgguguCCUCUCCCGcUCCCa -3'
miRNA:   3'- guguaCGGUCU-------GGAGGGGGUaAGGGg -5'
23857 5' -57.4 NC_005261.1 + 26514 0.66 0.826794
Target:  5'- cCGC-UGCCAcGcacgcgcaccccccCCUCCCCCcUUCUCCg -3'
miRNA:   3'- -GUGuACGGUcU--------------GGAGGGGGuAAGGGG- -5'
23857 5' -57.4 NC_005261.1 + 82454 0.66 0.820853
Target:  5'- nCGCGccGCCGuuGCCgCCCCCGgccccgUCCCCg -3'
miRNA:   3'- -GUGUa-CGGUc-UGGaGGGGGUa-----AGGGG- -5'
23857 5' -57.4 NC_005261.1 + 42556 0.66 0.820853
Target:  5'- gCAgGUGCUcuuGcCCgagCCCgCGUUCCCCg -3'
miRNA:   3'- -GUgUACGGu--CuGGa--GGGgGUAAGGGG- -5'
23857 5' -57.4 NC_005261.1 + 60856 0.67 0.794481
Target:  5'- uCGCGcGCCGGGCCgagCCCgcgCCGUguUCaCCCg -3'
miRNA:   3'- -GUGUaCGGUCUGGa--GGG---GGUA--AG-GGG- -5'
23857 5' -57.4 NC_005261.1 + 55551 0.67 0.794481
Target:  5'- ----aGCCAGGCC-CCgCCCAcgCCCa -3'
miRNA:   3'- guguaCGGUCUGGaGG-GGGUaaGGGg -5'
23857 5' -57.4 NC_005261.1 + 119304 0.67 0.794481
Target:  5'- aGCGgaggGCgAGGCCUCgCCCucgCCCUu -3'
miRNA:   3'- gUGUa---CGgUCUGGAGgGGGuaaGGGG- -5'
23857 5' -57.4 NC_005261.1 + 48608 0.67 0.794481
Target:  5'- cCGCGUGCgCGGccgcgcCCagCCCCAcgCCCCg -3'
miRNA:   3'- -GUGUACG-GUCu-----GGagGGGGUaaGGGG- -5'
23857 5' -57.4 NC_005261.1 + 129286 0.67 0.785387
Target:  5'- cCGCGccGCCccGCCcgCCCCCGgcgCCCCg -3'
miRNA:   3'- -GUGUa-CGGucUGGa-GGGGGUaa-GGGG- -5'
23857 5' -57.4 NC_005261.1 + 5594 0.67 0.785387
Target:  5'- gCGCccGCCucgAGGCCcCCCCCucuaaCCCCu -3'
miRNA:   3'- -GUGuaCGG---UCUGGaGGGGGuaa--GGGG- -5'
23857 5' -57.4 NC_005261.1 + 119725 0.67 0.776156
Target:  5'- gGCGUGCCcaaccCCUUCCCgCGcgCCCCg -3'
miRNA:   3'- gUGUACGGucu--GGAGGGG-GUaaGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.