miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23861 5' -60.7 NC_005262.1 + 57529 0.67 0.376743
Target:  5'- gAGcUGCugaccaucaucgaGGCGGCAaagaccguGCGCgCGGCGGGCu -3'
miRNA:   3'- gUCuACG-------------UCGCCGU--------CGCG-GCCGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 12415 0.66 0.440784
Target:  5'- uCAGgcGCGGCcuuGGcCGGCGUCG-CGGACg -3'
miRNA:   3'- -GUCuaCGUCG---CC-GUCGCGGCcGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 46912 0.72 0.175107
Target:  5'- gCGGuGUGguGCGGCccGGCGCgCGGcCGGGCg -3'
miRNA:   3'- -GUC-UACguCGCCG--UCGCG-GCC-GUCUG- -5'
23861 5' -60.7 NC_005262.1 + 61126 0.69 0.269976
Target:  5'- ---uUGCuacGGCGGCcaggacgccgcccGGCGCCGcGCAGGCa -3'
miRNA:   3'- gucuACG---UCGCCG-------------UCGCGGC-CGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 22113 0.67 0.3607
Target:  5'- aUAGAUGCcGauGcCGGUGCCGGCGG-Cg -3'
miRNA:   3'- -GUCUACGuCgcC-GUCGCGGCCGUCuG- -5'
23861 5' -60.7 NC_005262.1 + 57491 0.66 0.440784
Target:  5'- gAGAgGCGGcCGGCgAGCGCaagaaGGCGG-Cg -3'
miRNA:   3'- gUCUaCGUC-GCCG-UCGCGg----CCGUCuG- -5'
23861 5' -60.7 NC_005262.1 + 41206 0.69 0.270645
Target:  5'- -cGAUGUAGUuGaGCAGCGCCGcGCAuGCg -3'
miRNA:   3'- guCUACGUCG-C-CGUCGCGGC-CGUcUG- -5'
23861 5' -60.7 NC_005262.1 + 41654 0.66 0.440784
Target:  5'- -cGAUGCGGgCaGCcGCGgCGGcCAGACg -3'
miRNA:   3'- guCUACGUC-GcCGuCGCgGCC-GUCUG- -5'
23861 5' -60.7 NC_005262.1 + 44918 0.66 0.450293
Target:  5'- uGGAUGCGGCGcaaGGCGCUGcucCGGAUg -3'
miRNA:   3'- gUCUACGUCGCcg-UCGCGGCc--GUCUG- -5'
23861 5' -60.7 NC_005262.1 + 33677 0.66 0.401245
Target:  5'- ----aGCAGCGGCAcgaucgugggcuucGCGgCGGCcGGCg -3'
miRNA:   3'- gucuaCGUCGCCGU--------------CGCgGCCGuCUG- -5'
23861 5' -60.7 NC_005262.1 + 31375 0.67 0.3607
Target:  5'- -cGAUGaaacCGGCAGCGauGGCGGGCu -3'
miRNA:   3'- guCUACguc-GCCGUCGCggCCGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 50935 0.68 0.313229
Target:  5'- --cGUGCA-CGGCAGCGCgaagcuCGGCAcGACg -3'
miRNA:   3'- gucUACGUcGCCGUCGCG------GCCGU-CUG- -5'
23861 5' -60.7 NC_005262.1 + 208 0.7 0.253689
Target:  5'- cCGGcgGgGGCGGCGGagccagacacgcuacCGCCGGCGGcgGCg -3'
miRNA:   3'- -GUCuaCgUCGCCGUC---------------GCGGCCGUC--UG- -5'
23861 5' -60.7 NC_005262.1 + 14008 0.71 0.215667
Target:  5'- -cGGUGCAggggcguccggcGCGGCAGCgGCCGGagccuCGGGCg -3'
miRNA:   3'- guCUACGU------------CGCCGUCG-CGGCC-----GUCUG- -5'
23861 5' -60.7 NC_005262.1 + 17253 0.75 0.104869
Target:  5'- gCGGGaGCGGCGGcCGGCGCCGcGCuGGGCu -3'
miRNA:   3'- -GUCUaCGUCGCC-GUCGCGGC-CG-UCUG- -5'
23861 5' -60.7 NC_005262.1 + 54127 0.67 0.395025
Target:  5'- -cGGUGUuugcgcaggAGCGGCAGCGCC---AGACa -3'
miRNA:   3'- guCUACG---------UCGCCGUCGCGGccgUCUG- -5'
23861 5' -60.7 NC_005262.1 + 35517 0.66 0.43139
Target:  5'- ----cGCauaGGCGaCAGCGCCGGCcguGACg -3'
miRNA:   3'- gucuaCG---UCGCcGUCGCGGCCGu--CUG- -5'
23861 5' -60.7 NC_005262.1 + 15087 0.66 0.419356
Target:  5'- cCAGAacgacgcgucuuucUGCGGC-GCGGCGuCCGGCuGGAa -3'
miRNA:   3'- -GUCU--------------ACGUCGcCGUCGC-GGCCG-UCUg -5'
23861 5' -60.7 NC_005262.1 + 17563 0.66 0.401245
Target:  5'- gCAGccGCGGCGGCGcGCgaagccgaggagaaGCUGGCGGcGCa -3'
miRNA:   3'- -GUCuaCGUCGCCGU-CG--------------CGGCCGUC-UG- -5'
23861 5' -60.7 NC_005262.1 + 5017 0.7 0.244926
Target:  5'- uCGGcUGCcuccAGCGGCAGUugcucGCCGGCcGGCg -3'
miRNA:   3'- -GUCuACG----UCGCCGUCG-----CGGCCGuCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.