miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23867 5' -54.2 NC_005262.1 + 13759 0.66 0.77356
Target:  5'- cGGGAGCA--GCCGGCgccGGCUCGgGCUUc -3'
miRNA:   3'- -UUCUCGUucUGGUUG---UCGAGCgUGGA- -5'
23867 5' -54.2 NC_005262.1 + 24974 0.66 0.77356
Target:  5'- -uGAGCAcgcgAGACgguCAGCGuauccguuGCUCGCGCCg -3'
miRNA:   3'- uuCUCGU----UCUG---GUUGU--------CGAGCGUGGa -5'
23867 5' -54.2 NC_005262.1 + 7525 0.66 0.763202
Target:  5'- -cGGGCAGGuuCGGCGGCgcgucggCGCGCUc -3'
miRNA:   3'- uuCUCGUUCugGUUGUCGa------GCGUGGa -5'
23867 5' -54.2 NC_005262.1 + 50998 0.66 0.763202
Target:  5'- -cGAGC-AGGCCAAggaagcgacCGGCgacCGCGCCg -3'
miRNA:   3'- uuCUCGuUCUGGUU---------GUCGa--GCGUGGa -5'
23867 5' -54.2 NC_005262.1 + 14286 0.66 0.763202
Target:  5'- -cGAGC-AGGCCcuCGGCgaUCGCGCUg -3'
miRNA:   3'- uuCUCGuUCUGGuuGUCG--AGCGUGGa -5'
23867 5' -54.2 NC_005262.1 + 57528 0.66 0.752704
Target:  5'- -cGGGCAucGACCGcgauCAGgUCGUACCg -3'
miRNA:   3'- uuCUCGUu-CUGGUu---GUCgAGCGUGGa -5'
23867 5' -54.2 NC_005262.1 + 15603 0.66 0.752704
Target:  5'- gAGGAGCGcGugCGGCAGgagCGCAUCg -3'
miRNA:   3'- -UUCUCGUuCugGUUGUCga-GCGUGGa -5'
23867 5' -54.2 NC_005262.1 + 13522 0.66 0.752704
Target:  5'- -cGGGCucGGCCGGC-GCgggCGCGCCc -3'
miRNA:   3'- uuCUCGuuCUGGUUGuCGa--GCGUGGa -5'
23867 5' -54.2 NC_005262.1 + 40565 0.66 0.752704
Target:  5'- -cGGGCAAcACCGGCGGUgccgcgaccgUCGCGCUg -3'
miRNA:   3'- uuCUCGUUcUGGUUGUCG----------AGCGUGGa -5'
23867 5' -54.2 NC_005262.1 + 26019 0.66 0.742078
Target:  5'- cGAGGGCAcGuacuacgcCCAGCAGCUCGcCGCg- -3'
miRNA:   3'- -UUCUCGUuCu-------GGUUGUCGAGC-GUGga -5'
23867 5' -54.2 NC_005262.1 + 5825 0.66 0.741009
Target:  5'- gGAGAuGCGGGcgcGCCAauuucaaGCGcGCUCGCGCCc -3'
miRNA:   3'- -UUCU-CGUUC---UGGU-------UGU-CGAGCGUGGa -5'
23867 5' -54.2 NC_005262.1 + 33182 0.66 0.72049
Target:  5'- -cGGGCAAGACCuacCAcUUUGCGCCg -3'
miRNA:   3'- uuCUCGUUCUGGuu-GUcGAGCGUGGa -5'
23867 5' -54.2 NC_005262.1 + 21235 0.67 0.698536
Target:  5'- -cGAGCGAGGgaAGCGGCUCGUuuugauCCg -3'
miRNA:   3'- uuCUCGUUCUggUUGUCGAGCGu-----GGa -5'
23867 5' -54.2 NC_005262.1 + 11182 0.67 0.698536
Target:  5'- -cGAGCcGGugCGcuuCAGCUCGC-CCg -3'
miRNA:   3'- uuCUCGuUCugGUu--GUCGAGCGuGGa -5'
23867 5' -54.2 NC_005262.1 + 46992 0.67 0.698536
Target:  5'- -cGuGCAGGAacuCCAugAGCUCGCcguCCg -3'
miRNA:   3'- uuCuCGUUCU---GGUugUCGAGCGu--GGa -5'
23867 5' -54.2 NC_005262.1 + 30050 0.67 0.687451
Target:  5'- -cGGGCAAGACCGACGauGCUgccggcgacgaCGaCGCCg -3'
miRNA:   3'- uuCUCGUUCUGGUUGU--CGA-----------GC-GUGGa -5'
23867 5' -54.2 NC_005262.1 + 25729 0.67 0.676312
Target:  5'- --cAGCAAGaucgcGCCAGCGGC-CGUGCCg -3'
miRNA:   3'- uucUCGUUC-----UGGUUGUCGaGCGUGGa -5'
23867 5' -54.2 NC_005262.1 + 44815 0.67 0.665128
Target:  5'- gAAGGuCAcuGACCAGCAGCUCGCGa-- -3'
miRNA:   3'- -UUCUcGUu-CUGGUUGUCGAGCGUgga -5'
23867 5' -54.2 NC_005262.1 + 22673 0.67 0.665128
Target:  5'- cAGGGCGcGGACCAgugcGCAGa-CGCGCCUc -3'
miRNA:   3'- uUCUCGU-UCUGGU----UGUCgaGCGUGGA- -5'
23867 5' -54.2 NC_005262.1 + 25192 0.67 0.665128
Target:  5'- cAAGGGCGAcGACCAggacgacgacgaAgGGCUCGUGCUg -3'
miRNA:   3'- -UUCUCGUU-CUGGU------------UgUCGAGCGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.