miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23869 3' -56.2 NC_005262.1 + 12946 0.66 0.737058
Target:  5'- -aAGGg---CGuGCGCgaCGGCAUCGCCGa -3'
miRNA:   3'- agUCUaacaGC-CGCG--GCCGUAGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 10975 0.66 0.737058
Target:  5'- -----cUGUCGGCgcGCCGGgAaCGCCGg -3'
miRNA:   3'- agucuaACAGCCG--CGGCCgUaGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 38959 0.66 0.726694
Target:  5'- gCAGggUGaucggcaCGGCGCCGGCcgcgAUCGCg- -3'
miRNA:   3'- aGUCuaACa------GCCGCGGCCG----UAGUGgc -5'
23869 3' -56.2 NC_005262.1 + 46047 0.66 0.726694
Target:  5'- gCAGcgUGUCGucCGCCcGCuUCACCGu -3'
miRNA:   3'- aGUCuaACAGCc-GCGGcCGuAGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 56719 0.66 0.725652
Target:  5'- -aGGAcgUGUCcgaGGCGUCGGCGUUcgacaugGCCGc -3'
miRNA:   3'- agUCUa-ACAG---CCGCGGCCGUAG-------UGGC- -5'
23869 3' -56.2 NC_005262.1 + 5310 0.66 0.716239
Target:  5'- -gAGGcgGUCGGagcugGCCGGCAggagcuucgCACCGc -3'
miRNA:   3'- agUCUaaCAGCCg----CGGCCGUa--------GUGGC- -5'
23869 3' -56.2 NC_005262.1 + 37865 0.66 0.716239
Target:  5'- cCGGAaaaGUCGGCGUCGcGCGUgGCg- -3'
miRNA:   3'- aGUCUaa-CAGCCGCGGC-CGUAgUGgc -5'
23869 3' -56.2 NC_005262.1 + 19881 0.66 0.716239
Target:  5'- gUCGGccgcgGUUGGCGCCGcGC-UgACCGc -3'
miRNA:   3'- -AGUCuaa--CAGCCGCGGC-CGuAgUGGC- -5'
23869 3' -56.2 NC_005262.1 + 15717 0.66 0.716239
Target:  5'- ------cGUCGGCGCCGGgcggcuCGUCGCgGc -3'
miRNA:   3'- agucuaaCAGCCGCGGCC------GUAGUGgC- -5'
23869 3' -56.2 NC_005262.1 + 50887 0.66 0.713087
Target:  5'- gCAGGUUGUcguguccagcaggcCGGgGCUGaugcgcacgaGCGUCACCGu -3'
miRNA:   3'- aGUCUAACA--------------GCCgCGGC----------CGUAGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 7610 0.66 0.705704
Target:  5'- gUCGGAUgccgcaugguaGUCGGCGaucaCGGCGUCgAUCa -3'
miRNA:   3'- -AGUCUAa----------CAGCCGCg---GCCGUAG-UGGc -5'
23869 3' -56.2 NC_005262.1 + 1981 0.66 0.705704
Target:  5'- uUCGGGUacUCGaGCGCgaGGCAUgCGCCGc -3'
miRNA:   3'- -AGUCUAacAGC-CGCGg-CCGUA-GUGGC- -5'
23869 3' -56.2 NC_005262.1 + 11750 0.66 0.705704
Target:  5'- cCGGAcucgaUGUaGGCGCCGGCgAUCgucauGCCGu -3'
miRNA:   3'- aGUCUa----ACAgCCGCGGCCG-UAG-----UGGC- -5'
23869 3' -56.2 NC_005262.1 + 117 0.66 0.6951
Target:  5'- aCGGAUUG-CGuCGUCGcCGUCGCCGg -3'
miRNA:   3'- aGUCUAACaGCcGCGGCcGUAGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 2641 0.66 0.6951
Target:  5'- cCAGAUcggcccaugccUGcgCGGCGCCgggcGGCGUCcugGCCGc -3'
miRNA:   3'- aGUCUA-----------ACa-GCCGCGG----CCGUAG---UGGC- -5'
23869 3' -56.2 NC_005262.1 + 5157 0.66 0.684437
Target:  5'- cUCGGcgcgcUGaUCGGUgacgGCCGGCGUCGCgGg -3'
miRNA:   3'- -AGUCua---AC-AGCCG----CGGCCGUAGUGgC- -5'
23869 3' -56.2 NC_005262.1 + 57515 0.67 0.673726
Target:  5'- uUCAGc--GUC-GCGCCGGgCAUCgACCGc -3'
miRNA:   3'- -AGUCuaaCAGcCGCGGCC-GUAG-UGGC- -5'
23869 3' -56.2 NC_005262.1 + 31064 0.67 0.662977
Target:  5'- aCGGAgugGUCG--GCCGGCAgcaCGCCGa -3'
miRNA:   3'- aGUCUaa-CAGCcgCGGCCGUa--GUGGC- -5'
23869 3' -56.2 NC_005262.1 + 52327 0.67 0.652201
Target:  5'- cCGGAacaa-GGCGCCGGacgcgUAUCGCCGg -3'
miRNA:   3'- aGUCUaacagCCGCGGCC-----GUAGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 46540 0.67 0.630604
Target:  5'- cCAGcg---CGGCGCCGGC--CGCCGc -3'
miRNA:   3'- aGUCuaacaGCCGCGGCCGuaGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.