miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23870 3' -53.7 NC_005262.1 + 59900 1.11 0.000978
Target:  5'- gGAUGCAGCUCGAUGCAAGCCUGACGCu -3'
miRNA:   3'- -CUACGUCGAGCUACGUUCGGACUGCG- -5'
23870 3' -53.7 NC_005262.1 + 14637 0.78 0.211822
Target:  5'- -cUGCGGC-CGAUGC-GGCCUGcACGCc -3'
miRNA:   3'- cuACGUCGaGCUACGuUCGGAC-UGCG- -5'
23870 3' -53.7 NC_005262.1 + 8882 0.76 0.261055
Target:  5'- --gGCAGCgucaGGUGCGAGCCgucgaacUGGCGCg -3'
miRNA:   3'- cuaCGUCGag--CUACGUUCGG-------ACUGCG- -5'
23870 3' -53.7 NC_005262.1 + 50760 0.76 0.282785
Target:  5'- --cGCAGCUCGAcGCGcaccgcguAGCCcuUGGCGCg -3'
miRNA:   3'- cuaCGUCGAGCUaCGU--------UCGG--ACUGCG- -5'
23870 3' -53.7 NC_005262.1 + 5166 0.75 0.312907
Target:  5'- --gGCcGCUCGAcUGcCGAGCCUGACGg -3'
miRNA:   3'- cuaCGuCGAGCU-AC-GUUCGGACUGCg -5'
23870 3' -53.7 NC_005262.1 + 48292 0.75 0.312907
Target:  5'- uGUGCAGCUCGccggugaGCGAGCCgccGCGCu -3'
miRNA:   3'- cUACGUCGAGCua-----CGUUCGGac-UGCG- -5'
23870 3' -53.7 NC_005262.1 + 46894 0.75 0.320808
Target:  5'- cGGUGCGGUgcgggCGGUGCGguguggugcGGCCcGGCGCg -3'
miRNA:   3'- -CUACGUCGa----GCUACGU---------UCGGaCUGCG- -5'
23870 3' -53.7 NC_005262.1 + 56095 0.75 0.328857
Target:  5'- aGAUGCAGCUCGAggagGCGgcgcAGCUcucacagaucuuUGGCGUg -3'
miRNA:   3'- -CUACGUCGAGCUa---CGU----UCGG------------ACUGCG- -5'
23870 3' -53.7 NC_005262.1 + 52685 0.73 0.389313
Target:  5'- --aGCAGCUCGA-GCAggaaggccgccGGCC-GACGCc -3'
miRNA:   3'- cuaCGUCGAGCUaCGU-----------UCGGaCUGCG- -5'
23870 3' -53.7 NC_005262.1 + 33481 0.72 0.426979
Target:  5'- --cGCGcGUUCGAggauuCGGGCCUGACGCu -3'
miRNA:   3'- cuaCGU-CGAGCUac---GUUCGGACUGCG- -5'
23870 3' -53.7 NC_005262.1 + 39457 0.72 0.446605
Target:  5'- --cGCAGCUCGcugGCAAGCa-GGCGUc -3'
miRNA:   3'- cuaCGUCGAGCua-CGUUCGgaCUGCG- -5'
23870 3' -53.7 NC_005262.1 + 21536 0.72 0.446605
Target:  5'- cGGUGCAGCUCGcgGUccugAAGCa-GAUGCc -3'
miRNA:   3'- -CUACGUCGAGCuaCG----UUCGgaCUGCG- -5'
23870 3' -53.7 NC_005262.1 + 50776 0.72 0.456604
Target:  5'- aGGUGCGGUUCGAgauCAAGCCgaagGuCGCc -3'
miRNA:   3'- -CUACGUCGAGCUac-GUUCGGa---CuGCG- -5'
23870 3' -53.7 NC_005262.1 + 36187 0.72 0.456604
Target:  5'- aGUGCAGCUCGAc---GGCCUGuuCGCu -3'
miRNA:   3'- cUACGUCGAGCUacguUCGGACu-GCG- -5'
23870 3' -53.7 NC_005262.1 + 53803 0.72 0.476956
Target:  5'- uGAUGCAGgUCGAcagcgGCAcgGGCaucgagCUGACGCa -3'
miRNA:   3'- -CUACGUCgAGCUa----CGU--UCG------GACUGCG- -5'
23870 3' -53.7 NC_005262.1 + 27999 0.72 0.476956
Target:  5'- aGGUGCAGgaCGAgaacgacgGCGAGCCgaucuacgcgGGCGCc -3'
miRNA:   3'- -CUACGUCgaGCUa-------CGUUCGGa---------CUGCG- -5'
23870 3' -53.7 NC_005262.1 + 26039 0.71 0.487298
Target:  5'- --aGCAGCUCGccgcggcgcGCAAGCaggGGCGCa -3'
miRNA:   3'- cuaCGUCGAGCua-------CGUUCGga-CUGCG- -5'
23870 3' -53.7 NC_005262.1 + 34608 0.71 0.487298
Target:  5'- cGAUGaccuccauCAGCUCGGcgacgGCc-GCCUGACGCa -3'
miRNA:   3'- -CUAC--------GUCGAGCUa----CGuuCGGACUGCG- -5'
23870 3' -53.7 NC_005262.1 + 22597 0.71 0.497746
Target:  5'- --cGguGCUCGAaGCGGucGCCgGGCGCg -3'
miRNA:   3'- cuaCguCGAGCUaCGUU--CGGaCUGCG- -5'
23870 3' -53.7 NC_005262.1 + 61157 0.7 0.540467
Target:  5'- aGAUcGCGGCggCGG-GCGAGCUgacgGGCGCg -3'
miRNA:   3'- -CUA-CGUCGa-GCUaCGUUCGGa---CUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.