Results 21 - 40 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23870 | 3' | -53.7 | NC_005262.1 | + | 61157 | 0.7 | 0.540467 |
Target: 5'- aGAUcGCGGCggCGG-GCGAGCUgacgGGCGCg -3' miRNA: 3'- -CUA-CGUCGa-GCUaCGUUCGGa---CUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 44988 | 0.7 | 0.562294 |
Target: 5'- cGUGCAGCaguccgCGcgGCAGGCggcgGACGCc -3' miRNA: 3'- cUACGUCGa-----GCuaCGUUCGga--CUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 23950 | 0.7 | 0.562294 |
Target: 5'- --aGCaAGCUCG--GCGAGUgUGGCGCg -3' miRNA: 3'- cuaCG-UCGAGCuaCGUUCGgACUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 57190 | 0.7 | 0.588785 |
Target: 5'- aGGUGCaacaccAGCUCGAgGUcgcugaucuggaaugGAGCCUGAuCGCg -3' miRNA: 3'- -CUACG------UCGAGCUaCG---------------UUCGGACU-GCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 29775 | 0.7 | 0.595446 |
Target: 5'- --cGCGGCgcaCGAUGCG-GCCcGGCGUc -3' miRNA: 3'- cuaCGUCGa--GCUACGUuCGGaCUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 1133 | 0.7 | 0.595446 |
Target: 5'- -cUGCGGC-CGcUGCGGGCUUcGAUGCu -3' miRNA: 3'- cuACGUCGaGCuACGUUCGGA-CUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 36979 | 0.69 | 0.606573 |
Target: 5'- --cGCGGCcucgaauucCGAUGCAAgGCCgGGCGCc -3' miRNA: 3'- cuaCGUCGa--------GCUACGUU-CGGaCUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 33927 | 0.69 | 0.606573 |
Target: 5'- cGGUGCcgAGCUCGcgGCGGGC---ACGCg -3' miRNA: 3'- -CUACG--UCGAGCuaCGUUCGgacUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 55415 | 0.69 | 0.606573 |
Target: 5'- --aGCAGCUCGA-GCGccGGCUgGAgGCg -3' miRNA: 3'- cuaCGUCGAGCUaCGU--UCGGaCUgCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 42664 | 0.69 | 0.628885 |
Target: 5'- --aGCucuGGCUC--UGCGAGCCgUGGCGCc -3' miRNA: 3'- cuaCG---UCGAGcuACGUUCGG-ACUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 60386 | 0.69 | 0.628885 |
Target: 5'- cGAUGCGGCucgccgucUCGAUGUAccuggacgGGCacggGGCGCa -3' miRNA: 3'- -CUACGUCG--------AGCUACGU--------UCGga--CUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 8399 | 0.69 | 0.64005 |
Target: 5'- --aGCuGCUCGAUGCGGcgcucgaucuGCUUG-CGCg -3' miRNA: 3'- cuaCGuCGAGCUACGUU----------CGGACuGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 33185 | 0.69 | 0.64005 |
Target: 5'- gGcgGCGGCUCGAUcuucGCGcccuucagcGGCUUGGCGg -3' miRNA: 3'- -CuaCGUCGAGCUA----CGU---------UCGGACUGCg -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 39342 | 0.69 | 0.64005 |
Target: 5'- cGUGCAGCgccaUCGAU-CGGGCgUGACGg -3' miRNA: 3'- cUACGUCG----AGCUAcGUUCGgACUGCg -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 48183 | 0.69 | 0.651208 |
Target: 5'- --cGCGcCUCGAUGCGcuCCUGcCGCa -3' miRNA: 3'- cuaCGUcGAGCUACGUucGGACuGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 27447 | 0.69 | 0.651208 |
Target: 5'- cGUGCcgaUCGAU-CAAGCCUGACGg -3' miRNA: 3'- cUACGucgAGCUAcGUUCGGACUGCg -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 53560 | 0.69 | 0.651208 |
Target: 5'- aGAUGguGCUCGGcgcGCAcGCgCUGACcgGCa -3' miRNA: 3'- -CUACguCGAGCUa--CGUuCG-GACUG--CG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 6972 | 0.69 | 0.651208 |
Target: 5'- uGGUGCAGCUCGAaucgGUgAAGUacggcGACGCu -3' miRNA: 3'- -CUACGUCGAGCUa---CG-UUCGga---CUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 1824 | 0.69 | 0.651208 |
Target: 5'- uGUGCuuguGCUCGccGCAGGCU--GCGCa -3' miRNA: 3'- cUACGu---CGAGCuaCGUUCGGacUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 20741 | 0.68 | 0.662348 |
Target: 5'- --cGCGGCgcgCGGUGCcGGCCgggucGAUGUa -3' miRNA: 3'- cuaCGUCGa--GCUACGuUCGGa----CUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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