Results 21 - 40 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23870 | 3' | -53.7 | NC_005262.1 | + | 39457 | 0.72 | 0.446605 |
Target: 5'- --cGCAGCUCGcugGCAAGCa-GGCGUc -3' miRNA: 3'- cuaCGUCGAGCua-CGUUCGgaCUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 50776 | 0.72 | 0.456604 |
Target: 5'- aGGUGCGGUUCGAgauCAAGCCgaagGuCGCc -3' miRNA: 3'- -CUACGUCGAGCUac-GUUCGGa---CuGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 27999 | 0.72 | 0.476956 |
Target: 5'- aGGUGCAGgaCGAgaacgacgGCGAGCCgaucuacgcgGGCGCc -3' miRNA: 3'- -CUACGUCgaGCUa-------CGUUCGGa---------CUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 53803 | 0.72 | 0.476956 |
Target: 5'- uGAUGCAGgUCGAcagcgGCAcgGGCaucgagCUGACGCa -3' miRNA: 3'- -CUACGUCgAGCUa----CGU--UCG------GACUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 26039 | 0.71 | 0.487298 |
Target: 5'- --aGCAGCUCGccgcggcgcGCAAGCaggGGCGCa -3' miRNA: 3'- cuaCGUCGAGCua-------CGUUCGga-CUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 61157 | 0.7 | 0.540467 |
Target: 5'- aGAUcGCGGCggCGG-GCGAGCUgacgGGCGCg -3' miRNA: 3'- -CUA-CGUCGa-GCUaCGUUCGGa---CUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 33927 | 0.69 | 0.606573 |
Target: 5'- cGGUGCcgAGCUCGcgGCGGGC---ACGCg -3' miRNA: 3'- -CUACG--UCGAGCuaCGUUCGgacUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 55415 | 0.69 | 0.606573 |
Target: 5'- --aGCAGCUCGA-GCGccGGCUgGAgGCg -3' miRNA: 3'- cuaCGUCGAGCUaCGU--UCGGaCUgCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 1133 | 0.7 | 0.595446 |
Target: 5'- -cUGCGGC-CGcUGCGGGCUUcGAUGCu -3' miRNA: 3'- cuACGUCGaGCuACGUUCGGA-CUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 44988 | 0.7 | 0.562294 |
Target: 5'- cGUGCAGCaguccgCGcgGCAGGCggcgGACGCc -3' miRNA: 3'- cUACGUCGa-----GCuaCGUUCGga--CUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 23950 | 0.7 | 0.562294 |
Target: 5'- --aGCaAGCUCG--GCGAGUgUGGCGCg -3' miRNA: 3'- cuaCG-UCGAGCuaCGUUCGgACUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 43390 | 0.7 | 0.540467 |
Target: 5'- cGAUGCgAGCaUCGGcgGCGAGCUcaacGGCGCg -3' miRNA: 3'- -CUACG-UCG-AGCUa-CGUUCGGa---CUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 42297 | 0.66 | 0.807097 |
Target: 5'- --cGC-GCUCGGUGCGccacugguacgcauGGCC-GAUGCc -3' miRNA: 3'- cuaCGuCGAGCUACGU--------------UCGGaCUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 38056 | 0.66 | 0.809979 |
Target: 5'- --aGCGGCU---UGCcGGCCUG-CGCg -3' miRNA: 3'- cuaCGUCGAgcuACGuUCGGACuGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 46541 | 0.66 | 0.809979 |
Target: 5'- --cGCAGCUCGAacagGCGcgucuccucGGCCgaguUGAuCGCg -3' miRNA: 3'- cuaCGUCGAGCUa---CGU---------UCGG----ACU-GCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 61583 | 0.66 | 0.809979 |
Target: 5'- --aGCGGCUucgacgCGAUGUgccgcgcgaucgAAGCCUacgaGACGCa -3' miRNA: 3'- cuaCGUCGA------GCUACG------------UUCGGA----CUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 9662 | 0.66 | 0.809979 |
Target: 5'- uGAUGU-GCUCGA-GCGAGUaggcgagGGCGCc -3' miRNA: 3'- -CUACGuCGAGCUaCGUUCGga-----CUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 13989 | 0.66 | 0.809979 |
Target: 5'- --cGCGGC-CGAU-CGGGCCgGACGg -3' miRNA: 3'- cuaCGUCGaGCUAcGUUCGGaCUGCg -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 52298 | 0.66 | 0.809979 |
Target: 5'- cGAUGCAGC-CGA-GCucGGC--GACGCg -3' miRNA: 3'- -CUACGUCGaGCUaCGu-UCGgaCUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 59900 | 1.11 | 0.000978 |
Target: 5'- gGAUGCAGCUCGAUGCAAGCCUGACGCu -3' miRNA: 3'- -CUACGUCGAGCUACGUUCGGACUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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