miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23870 3' -53.7 NC_005262.1 + 10443 0.68 0.706505
Target:  5'- cAUGCAgauGCUCG--GCAAGCCgGGCGg -3'
miRNA:   3'- cUACGU---CGAGCuaCGUUCGGaCUGCg -5'
23870 3' -53.7 NC_005262.1 + 1133 0.7 0.595446
Target:  5'- -cUGCGGC-CGcUGCGGGCUUcGAUGCu -3'
miRNA:   3'- cuACGUCGaGCuACGUUCGGA-CUGCG- -5'
23870 3' -53.7 NC_005262.1 + 55415 0.69 0.606573
Target:  5'- --aGCAGCUCGA-GCGccGGCUgGAgGCg -3'
miRNA:   3'- cuaCGUCGAGCUaCGU--UCGGaCUgCG- -5'
23870 3' -53.7 NC_005262.1 + 33927 0.69 0.606573
Target:  5'- cGGUGCcgAGCUCGcgGCGGGC---ACGCg -3'
miRNA:   3'- -CUACG--UCGAGCuaCGUUCGgacUGCG- -5'
23870 3' -53.7 NC_005262.1 + 42664 0.69 0.628885
Target:  5'- --aGCucuGGCUC--UGCGAGCCgUGGCGCc -3'
miRNA:   3'- cuaCG---UCGAGcuACGUUCGG-ACUGCG- -5'
23870 3' -53.7 NC_005262.1 + 1824 0.69 0.651208
Target:  5'- uGUGCuuguGCUCGccGCAGGCU--GCGCa -3'
miRNA:   3'- cUACGu---CGAGCuaCGUUCGGacUGCG- -5'
23870 3' -53.7 NC_005262.1 + 6972 0.69 0.651208
Target:  5'- uGGUGCAGCUCGAaucgGUgAAGUacggcGACGCu -3'
miRNA:   3'- -CUACGUCGAGCUa---CG-UUCGga---CUGCG- -5'
23870 3' -53.7 NC_005262.1 + 53560 0.69 0.651208
Target:  5'- aGAUGguGCUCGGcgcGCAcGCgCUGACcgGCa -3'
miRNA:   3'- -CUACguCGAGCUa--CGUuCG-GACUG--CG- -5'
23870 3' -53.7 NC_005262.1 + 27447 0.69 0.651208
Target:  5'- cGUGCcgaUCGAU-CAAGCCUGACGg -3'
miRNA:   3'- cUACGucgAGCUAcGUUCGGACUGCg -5'
23870 3' -53.7 NC_005262.1 + 44988 0.7 0.562294
Target:  5'- cGUGCAGCaguccgCGcgGCAGGCggcgGACGCc -3'
miRNA:   3'- cUACGUCGa-----GCuaCGUUCGga--CUGCG- -5'
23870 3' -53.7 NC_005262.1 + 23950 0.7 0.562294
Target:  5'- --aGCaAGCUCG--GCGAGUgUGGCGCg -3'
miRNA:   3'- cuaCG-UCGAGCuaCGUUCGgACUGCG- -5'
23870 3' -53.7 NC_005262.1 + 43390 0.7 0.540467
Target:  5'- cGAUGCgAGCaUCGGcgGCGAGCUcaacGGCGCg -3'
miRNA:   3'- -CUACG-UCG-AGCUa-CGUUCGGa---CUGCG- -5'
23870 3' -53.7 NC_005262.1 + 33481 0.72 0.426979
Target:  5'- --cGCGcGUUCGAggauuCGGGCCUGACGCu -3'
miRNA:   3'- cuaCGU-CGAGCUac---GUUCGGACUGCG- -5'
23870 3' -53.7 NC_005262.1 + 21536 0.72 0.446605
Target:  5'- cGGUGCAGCUCGcgGUccugAAGCa-GAUGCc -3'
miRNA:   3'- -CUACGUCGAGCuaCG----UUCGgaCUGCG- -5'
23870 3' -53.7 NC_005262.1 + 39457 0.72 0.446605
Target:  5'- --cGCAGCUCGcugGCAAGCa-GGCGUc -3'
miRNA:   3'- cuaCGUCGAGCua-CGUUCGgaCUGCG- -5'
23870 3' -53.7 NC_005262.1 + 50776 0.72 0.456604
Target:  5'- aGGUGCGGUUCGAgauCAAGCCgaagGuCGCc -3'
miRNA:   3'- -CUACGUCGAGCUac-GUUCGGa---CuGCG- -5'
23870 3' -53.7 NC_005262.1 + 27999 0.72 0.476956
Target:  5'- aGGUGCAGgaCGAgaacgacgGCGAGCCgaucuacgcgGGCGCc -3'
miRNA:   3'- -CUACGUCgaGCUa-------CGUUCGGa---------CUGCG- -5'
23870 3' -53.7 NC_005262.1 + 53803 0.72 0.476956
Target:  5'- uGAUGCAGgUCGAcagcgGCAcgGGCaucgagCUGACGCa -3'
miRNA:   3'- -CUACGUCgAGCUa----CGU--UCG------GACUGCG- -5'
23870 3' -53.7 NC_005262.1 + 26039 0.71 0.487298
Target:  5'- --aGCAGCUCGccgcggcgcGCAAGCaggGGCGCa -3'
miRNA:   3'- cuaCGUCGAGCua-------CGUUCGga-CUGCG- -5'
23870 3' -53.7 NC_005262.1 + 61157 0.7 0.540467
Target:  5'- aGAUcGCGGCggCGG-GCGAGCUgacgGGCGCg -3'
miRNA:   3'- -CUA-CGUCGa-GCUaCGUUCGGa---CUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.