Results 1 - 20 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23870 | 3' | -53.7 | NC_005262.1 | + | 14273 | 0.66 | 0.819459 |
Target: 5'- uGcgGCAGCuccUCGA-GCAGGCCcucGGCGa -3' miRNA: 3'- -CuaCGUCG---AGCUaCGUUCGGa--CUGCg -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 57708 | 0.67 | 0.717386 |
Target: 5'- cGUGCGGaucacCGAgaagaagGCcgcGGCCUGACGCa -3' miRNA: 3'- cUACGUCga---GCUa------CGu--UCGGACUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 15728 | 0.67 | 0.717386 |
Target: 5'- --gGCGGCUCGucgcgGCAGGUgCgaccGACGCg -3' miRNA: 3'- cuaCGUCGAGCua---CGUUCG-Ga---CUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 59900 | 1.11 | 0.000978 |
Target: 5'- gGAUGCAGCUCGAUGCAAGCCUGACGCu -3' miRNA: 3'- -CUACGUCGAGCUACGUUCGGACUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 61583 | 0.66 | 0.809979 |
Target: 5'- --aGCGGCUucgacgCGAUGUgccgcgcgaucgAAGCCUacgaGACGCa -3' miRNA: 3'- cuaCGUCGA------GCUACG------------UUCGGA----CUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 46541 | 0.66 | 0.809979 |
Target: 5'- --cGCAGCUCGAacagGCGcgucuccucGGCCgaguUGAuCGCg -3' miRNA: 3'- cuaCGUCGAGCUa---CGU---------UCGG----ACU-GCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 42297 | 0.66 | 0.807097 |
Target: 5'- --cGC-GCUCGGUGCGccacugguacgcauGGCC-GAUGCc -3' miRNA: 3'- cuaCGuCGAGCUACGU--------------UCGGaCUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 41580 | 0.66 | 0.790454 |
Target: 5'- --cGCGGCcgugagcuugUCGAgcGCGAGCCcGGCGUu -3' miRNA: 3'- cuaCGUCG----------AGCUa-CGUUCGGaCUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 34084 | 0.67 | 0.77025 |
Target: 5'- gGAUGCuGCUuggccCGGUGCGGGCggUUG-CGCa -3' miRNA: 3'- -CUACGuCGA-----GCUACGUUCG--GACuGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 46820 | 0.67 | 0.717386 |
Target: 5'- gGcgGCAGCagggcaauaUCGGUGCccGGCUUGGCGg -3' miRNA: 3'- -CuaCGUCG---------AGCUACGu-UCGGACUGCg -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 35652 | 0.67 | 0.759923 |
Target: 5'- --cGCGcGCUCGGggaagaugGCGAGCaUGACGUc -3' miRNA: 3'- cuaCGU-CGAGCUa-------CGUUCGgACUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 29033 | 0.67 | 0.77025 |
Target: 5'- --cGCcgAGCUCGA-GCGGcGCCggcacGACGCg -3' miRNA: 3'- cuaCG--UCGAGCUaCGUU-CGGa----CUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 52298 | 0.66 | 0.809979 |
Target: 5'- cGAUGCAGC-CGA-GCucGGC--GACGCg -3' miRNA: 3'- -CUACGUCGaGCUaCGu-UCGgaCUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 46168 | 0.67 | 0.759923 |
Target: 5'- -cUGCuGCUCG--GCGAGCucgcgcugCUGGCGCu -3' miRNA: 3'- cuACGuCGAGCuaCGUUCG--------GACUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 13989 | 0.66 | 0.809979 |
Target: 5'- --cGCGGC-CGAU-CGGGCCgGACGg -3' miRNA: 3'- cuaCGUCGaGCUAcGUUCGGaCUGCg -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 37738 | 0.66 | 0.780432 |
Target: 5'- --gGaCGGCUUGAUGCGccCCUGcuuGCGCg -3' miRNA: 3'- cuaC-GUCGAGCUACGUucGGAC---UGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 44988 | 0.67 | 0.759923 |
Target: 5'- aGAUGUGGCUgGAcaaCGAGCCgcacGugGCg -3' miRNA: 3'- -CUACGUCGAgCUac-GUUCGGa---CugCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 51045 | 0.67 | 0.717386 |
Target: 5'- uAUGCAGCggGAgGCGcAGCCacugaccgaUGACGCg -3' miRNA: 3'- cUACGUCGagCUaCGU-UCGG---------ACUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 9662 | 0.66 | 0.809979 |
Target: 5'- uGAUGU-GCUCGA-GCGAGUaggcgagGGCGCc -3' miRNA: 3'- -CUACGuCGAGCUaCGUUCGga-----CUGCG- -5' |
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23870 | 3' | -53.7 | NC_005262.1 | + | 38056 | 0.66 | 0.809979 |
Target: 5'- --aGCGGCU---UGCcGGCCUG-CGCg -3' miRNA: 3'- cuaCGUCGAgcuACGuUCGGACuGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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