miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23870 3' -53.7 NC_005262.1 + 1133 0.7 0.595446
Target:  5'- -cUGCGGC-CGcUGCGGGCUUcGAUGCu -3'
miRNA:   3'- cuACGUCGaGCuACGUUCGGA-CUGCG- -5'
23870 3' -53.7 NC_005262.1 + 1824 0.69 0.651208
Target:  5'- uGUGCuuguGCUCGccGCAGGCU--GCGCa -3'
miRNA:   3'- cUACGu---CGAGCuaCGUUCGGacUGCG- -5'
23870 3' -53.7 NC_005262.1 + 5166 0.75 0.312907
Target:  5'- --gGCcGCUCGAcUGcCGAGCCUGACGg -3'
miRNA:   3'- cuaCGuCGAGCU-AC-GUUCGGACUGCg -5'
23870 3' -53.7 NC_005262.1 + 6972 0.69 0.651208
Target:  5'- uGGUGCAGCUCGAaucgGUgAAGUacggcGACGCu -3'
miRNA:   3'- -CUACGUCGAGCUa---CG-UUCGga---CUGCG- -5'
23870 3' -53.7 NC_005262.1 + 8399 0.69 0.64005
Target:  5'- --aGCuGCUCGAUGCGGcgcucgaucuGCUUG-CGCg -3'
miRNA:   3'- cuaCGuCGAGCUACGUU----------CGGACuGCG- -5'
23870 3' -53.7 NC_005262.1 + 8882 0.76 0.261055
Target:  5'- --gGCAGCgucaGGUGCGAGCCgucgaacUGGCGCg -3'
miRNA:   3'- cuaCGUCGag--CUACGUUCGG-------ACUGCG- -5'
23870 3' -53.7 NC_005262.1 + 9662 0.66 0.809979
Target:  5'- uGAUGU-GCUCGA-GCGAGUaggcgagGGCGCc -3'
miRNA:   3'- -CUACGuCGAGCUaCGUUCGga-----CUGCG- -5'
23870 3' -53.7 NC_005262.1 + 10443 0.68 0.706505
Target:  5'- cAUGCAgauGCUCG--GCAAGCCgGGCGg -3'
miRNA:   3'- cUACGU---CGAGCuaCGUUCGGaCUGCg -5'
23870 3' -53.7 NC_005262.1 + 13989 0.66 0.809979
Target:  5'- --cGCGGC-CGAU-CGGGCCgGACGg -3'
miRNA:   3'- cuaCGUCGaGCUAcGUUCGGaCUGCg -5'
23870 3' -53.7 NC_005262.1 + 14273 0.66 0.819459
Target:  5'- uGcgGCAGCuccUCGA-GCAGGCCcucGGCGa -3'
miRNA:   3'- -CuaCGUCG---AGCUaCGUUCGGa--CUGCg -5'
23870 3' -53.7 NC_005262.1 + 14637 0.78 0.211822
Target:  5'- -cUGCGGC-CGAUGC-GGCCUGcACGCc -3'
miRNA:   3'- cuACGUCGaGCUACGuUCGGAC-UGCG- -5'
23870 3' -53.7 NC_005262.1 + 15728 0.67 0.717386
Target:  5'- --gGCGGCUCGucgcgGCAGGUgCgaccGACGCg -3'
miRNA:   3'- cuaCGUCGAGCua---CGUUCG-Ga---CUGCG- -5'
23870 3' -53.7 NC_005262.1 + 16044 0.68 0.706505
Target:  5'- cGAUGCcgGGUUCGccGC-GGCCggcGGCGCa -3'
miRNA:   3'- -CUACG--UCGAGCuaCGuUCGGa--CUGCG- -5'
23870 3' -53.7 NC_005262.1 + 17045 0.66 0.819459
Target:  5'- --aGCAGCUCc--GCGAGCUcGuCGCg -3'
miRNA:   3'- cuaCGUCGAGcuaCGUUCGGaCuGCG- -5'
23870 3' -53.7 NC_005262.1 + 17228 0.67 0.77025
Target:  5'- --aGCGGCUCGucGCGaucaacucGGCCgaggaGACGCg -3'
miRNA:   3'- cuaCGUCGAGCuaCGU--------UCGGa----CUGCG- -5'
23870 3' -53.7 NC_005262.1 + 19008 0.67 0.77025
Target:  5'- --cGuCAGCUCGucgaGCucGGCCUGcCGCg -3'
miRNA:   3'- cuaC-GUCGAGCua--CGu-UCGGACuGCG- -5'
23870 3' -53.7 NC_005262.1 + 20741 0.68 0.662348
Target:  5'- --cGCGGCgcgCGGUGCcGGCCgggucGAUGUa -3'
miRNA:   3'- cuaCGUCGa--GCUACGuUCGGa----CUGCG- -5'
23870 3' -53.7 NC_005262.1 + 21536 0.72 0.446605
Target:  5'- cGGUGCAGCUCGcgGUccugAAGCa-GAUGCc -3'
miRNA:   3'- -CUACGUCGAGCuaCG----UUCGgaCUGCG- -5'
23870 3' -53.7 NC_005262.1 + 22597 0.71 0.497746
Target:  5'- --cGguGCUCGAaGCGGucGCCgGGCGCg -3'
miRNA:   3'- cuaCguCGAGCUaCGUU--CGGaCUGCG- -5'
23870 3' -53.7 NC_005262.1 + 23950 0.7 0.562294
Target:  5'- --aGCaAGCUCG--GCGAGUgUGGCGCg -3'
miRNA:   3'- cuaCG-UCGAGCuaCGUUCGgACUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.