miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23870 3' -53.7 NC_005262.1 + 63365 0.67 0.749461
Target:  5'- cAUGC-GCUCGAaGCAaaacGGCUUuccGACGCa -3'
miRNA:   3'- cUACGuCGAGCUaCGU----UCGGA---CUGCG- -5'
23870 3' -53.7 NC_005262.1 + 62230 0.68 0.673459
Target:  5'- -uUGCA-CUCGAUuCGAGCCU-ACGCa -3'
miRNA:   3'- cuACGUcGAGCUAcGUUCGGAcUGCG- -5'
23870 3' -53.7 NC_005262.1 + 61779 0.68 0.706505
Target:  5'- --aGCAGCaCGAaGCAGcGCCgUGGCGUg -3'
miRNA:   3'- cuaCGUCGaGCUaCGUU-CGG-ACUGCG- -5'
23870 3' -53.7 NC_005262.1 + 61583 0.66 0.809979
Target:  5'- --aGCGGCUucgacgCGAUGUgccgcgcgaucgAAGCCUacgaGACGCa -3'
miRNA:   3'- cuaCGUCGA------GCUACG------------UUCGGA----CUGCG- -5'
23870 3' -53.7 NC_005262.1 + 61157 0.7 0.540467
Target:  5'- aGAUcGCGGCggCGG-GCGAGCUgacgGGCGCg -3'
miRNA:   3'- -CUA-CGUCGa-GCUaCGUUCGGa---CUGCG- -5'
23870 3' -53.7 NC_005262.1 + 60386 0.69 0.628885
Target:  5'- cGAUGCGGCucgccgucUCGAUGUAccuggacgGGCacggGGCGCa -3'
miRNA:   3'- -CUACGUCG--------AGCUACGU--------UCGga--CUGCG- -5'
23870 3' -53.7 NC_005262.1 + 59900 1.11 0.000978
Target:  5'- gGAUGCAGCUCGAUGCAAGCCUGACGCu -3'
miRNA:   3'- -CUACGUCGAGCUACGUUCGGACUGCG- -5'
23870 3' -53.7 NC_005262.1 + 59316 0.67 0.738876
Target:  5'- --gGCGGCUCGG-GCAugacgacGgCUGAUGCg -3'
miRNA:   3'- cuaCGUCGAGCUaCGUu------CgGACUGCG- -5'
23870 3' -53.7 NC_005262.1 + 57708 0.67 0.717386
Target:  5'- cGUGCGGaucacCGAgaagaagGCcgcGGCCUGACGCa -3'
miRNA:   3'- cUACGUCga---GCUa------CGu--UCGGACUGCG- -5'
23870 3' -53.7 NC_005262.1 + 57695 0.66 0.81852
Target:  5'- --cGCGGCaaGGUGCuuucgguAGGCCgccacGACGCg -3'
miRNA:   3'- cuaCGUCGagCUACG-------UUCGGa----CUGCG- -5'
23870 3' -53.7 NC_005262.1 + 57190 0.7 0.588785
Target:  5'- aGGUGCaacaccAGCUCGAgGUcgcugaucuggaaugGAGCCUGAuCGCg -3'
miRNA:   3'- -CUACG------UCGAGCUaCG---------------UUCGGACU-GCG- -5'
23870 3' -53.7 NC_005262.1 + 56095 0.75 0.328857
Target:  5'- aGAUGCAGCUCGAggagGCGgcgcAGCUcucacagaucuuUGGCGUg -3'
miRNA:   3'- -CUACGUCGAGCUa---CGU----UCGG------------ACUGCG- -5'
23870 3' -53.7 NC_005262.1 + 55415 0.69 0.606573
Target:  5'- --aGCAGCUCGA-GCGccGGCUgGAgGCg -3'
miRNA:   3'- cuaCGUCGAGCUaCGU--UCGGaCUgCG- -5'
23870 3' -53.7 NC_005262.1 + 54412 0.66 0.790454
Target:  5'- cGUGCgcaAGCUCGcggaggcGCAGGCCgccGCGCg -3'
miRNA:   3'- cUACG---UCGAGCua-----CGUUCGGac-UGCG- -5'
23870 3' -53.7 NC_005262.1 + 53803 0.72 0.476956
Target:  5'- uGAUGCAGgUCGAcagcgGCAcgGGCaucgagCUGACGCa -3'
miRNA:   3'- -CUACGUCgAGCUa----CGU--UCG------GACUGCG- -5'
23870 3' -53.7 NC_005262.1 + 53560 0.69 0.651208
Target:  5'- aGAUGguGCUCGGcgcGCAcGCgCUGACcgGCa -3'
miRNA:   3'- -CUACguCGAGCUa--CGUuCG-GACUG--CG- -5'
23870 3' -53.7 NC_005262.1 + 53003 0.68 0.684529
Target:  5'- cGcgGCAGCUCGcgcaGCAGuaccgcgcGCCcGGCGCg -3'
miRNA:   3'- -CuaCGUCGAGCua--CGUU--------CGGaCUGCG- -5'
23870 3' -53.7 NC_005262.1 + 52685 0.73 0.389313
Target:  5'- --aGCAGCUCGA-GCAggaaggccgccGGCC-GACGCc -3'
miRNA:   3'- cuaCGUCGAGCUaCGU-----------UCGGaCUGCG- -5'
23870 3' -53.7 NC_005262.1 + 52298 0.66 0.809979
Target:  5'- cGAUGCAGC-CGA-GCucGGC--GACGCg -3'
miRNA:   3'- -CUACGUCGaGCUaCGu-UCGgaCUGCG- -5'
23870 3' -53.7 NC_005262.1 + 51355 0.67 0.759923
Target:  5'- cAUGCAGCUCG--GCAccgcGCCguccgcGACGCc -3'
miRNA:   3'- cUACGUCGAGCuaCGUu---CGGa-----CUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.