miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23870 3' -53.7 NC_005262.1 + 24343 0.66 0.800307
Target:  5'- cAUGCGGCUCugcgucgGCGcGCCUGAuaccUGCa -3'
miRNA:   3'- cUACGUCGAGcua----CGUuCGGACU----GCG- -5'
23870 3' -53.7 NC_005262.1 + 26039 0.71 0.487298
Target:  5'- --aGCAGCUCGccgcggcgcGCAAGCaggGGCGCa -3'
miRNA:   3'- cuaCGUCGAGCua-------CGUUCGga-CUGCG- -5'
23870 3' -53.7 NC_005262.1 + 27447 0.69 0.651208
Target:  5'- cGUGCcgaUCGAU-CAAGCCUGACGg -3'
miRNA:   3'- cUACGucgAGCUAcGUUCGGACUGCg -5'
23870 3' -53.7 NC_005262.1 + 27999 0.72 0.476956
Target:  5'- aGGUGCAGgaCGAgaacgacgGCGAGCCgaucuacgcgGGCGCc -3'
miRNA:   3'- -CUACGUCgaGCUa-------CGUUCGGa---------CUGCG- -5'
23870 3' -53.7 NC_005262.1 + 29033 0.67 0.77025
Target:  5'- --cGCcgAGCUCGA-GCGGcGCCggcacGACGCg -3'
miRNA:   3'- cuaCG--UCGAGCUaCGUU-CGGa----CUGCG- -5'
23870 3' -53.7 NC_005262.1 + 29775 0.7 0.595446
Target:  5'- --cGCGGCgcaCGAUGCG-GCCcGGCGUc -3'
miRNA:   3'- cuaCGUCGa--GCUACGUuCGGaCUGCG- -5'
23870 3' -53.7 NC_005262.1 + 33185 0.69 0.64005
Target:  5'- gGcgGCGGCUCGAUcuucGCGcccuucagcGGCUUGGCGg -3'
miRNA:   3'- -CuaCGUCGAGCUA----CGU---------UCGGACUGCg -5'
23870 3' -53.7 NC_005262.1 + 33481 0.72 0.426979
Target:  5'- --cGCGcGUUCGAggauuCGGGCCUGACGCu -3'
miRNA:   3'- cuaCGU-CGAGCUac---GUUCGGACUGCG- -5'
23870 3' -53.7 NC_005262.1 + 33927 0.69 0.606573
Target:  5'- cGGUGCcgAGCUCGcgGCGGGC---ACGCg -3'
miRNA:   3'- -CUACG--UCGAGCuaCGUUCGgacUGCG- -5'
23870 3' -53.7 NC_005262.1 + 34084 0.67 0.77025
Target:  5'- gGAUGCuGCUuggccCGGUGCGGGCggUUG-CGCa -3'
miRNA:   3'- -CUACGuCGA-----GCUACGUUCG--GACuGCG- -5'
23870 3' -53.7 NC_005262.1 + 34608 0.71 0.487298
Target:  5'- cGAUGaccuccauCAGCUCGGcgacgGCc-GCCUGACGCa -3'
miRNA:   3'- -CUAC--------GUCGAGCUa----CGuuCGGACUGCG- -5'
23870 3' -53.7 NC_005262.1 + 35652 0.67 0.759923
Target:  5'- --cGCGcGCUCGGggaagaugGCGAGCaUGACGUc -3'
miRNA:   3'- cuaCGU-CGAGCUa-------CGUUCGgACUGCG- -5'
23870 3' -53.7 NC_005262.1 + 36187 0.72 0.456604
Target:  5'- aGUGCAGCUCGAc---GGCCUGuuCGCu -3'
miRNA:   3'- cUACGUCGAGCUacguUCGGACu-GCG- -5'
23870 3' -53.7 NC_005262.1 + 36621 0.66 0.819459
Target:  5'- aAUGCGGUUCGGUuGCuGGa-UGGCGCc -3'
miRNA:   3'- cUACGUCGAGCUA-CGuUCggACUGCG- -5'
23870 3' -53.7 NC_005262.1 + 36979 0.69 0.606573
Target:  5'- --cGCGGCcucgaauucCGAUGCAAgGCCgGGCGCc -3'
miRNA:   3'- cuaCGUCGa--------GCUACGUU-CGGaCUGCG- -5'
23870 3' -53.7 NC_005262.1 + 37738 0.66 0.780432
Target:  5'- --gGaCGGCUUGAUGCGccCCUGcuuGCGCg -3'
miRNA:   3'- cuaC-GUCGAGCUACGUucGGAC---UGCG- -5'
23870 3' -53.7 NC_005262.1 + 38056 0.66 0.809979
Target:  5'- --aGCGGCU---UGCcGGCCUG-CGCg -3'
miRNA:   3'- cuaCGUCGAgcuACGuUCGGACuGCG- -5'
23870 3' -53.7 NC_005262.1 + 38325 0.68 0.706505
Target:  5'- cGUGCAGUuggCGAgcgGCAucGCCUcGCGCa -3'
miRNA:   3'- cUACGUCGa--GCUa--CGUu-CGGAcUGCG- -5'
23870 3' -53.7 NC_005262.1 + 39342 0.69 0.64005
Target:  5'- cGUGCAGCgccaUCGAU-CGGGCgUGACGg -3'
miRNA:   3'- cUACGUCG----AGCUAcGUUCGgACUGCg -5'
23870 3' -53.7 NC_005262.1 + 39457 0.72 0.446605
Target:  5'- --cGCAGCUCGcugGCAAGCa-GGCGUc -3'
miRNA:   3'- cuaCGUCGAGCua-CGUUCGgaCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.