miRNA display CGI


Results 21 - 40 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23870 3' -53.7 NC_005262.1 + 51355 0.67 0.759923
Target:  5'- cAUGCAGCUCG--GCAccgcGCCguccgcGACGCc -3'
miRNA:   3'- cUACGUCGAGCuaCGUu---CGGa-----CUGCG- -5'
23870 3' -53.7 NC_005262.1 + 35652 0.67 0.759923
Target:  5'- --cGCGcGCUCGGggaagaugGCGAGCaUGACGUc -3'
miRNA:   3'- cuaCGU-CGAGCUa-------CGUUCGgACUGCG- -5'
23870 3' -53.7 NC_005262.1 + 46168 0.67 0.759923
Target:  5'- -cUGCuGCUCG--GCGAGCucgcgcugCUGGCGCu -3'
miRNA:   3'- cuACGuCGAGCuaCGUUCG--------GACUGCG- -5'
23870 3' -53.7 NC_005262.1 + 44988 0.67 0.759923
Target:  5'- aGAUGUGGCUgGAcaaCGAGCCgcacGugGCg -3'
miRNA:   3'- -CUACGUCGAgCUac-GUUCGGa---CugCG- -5'
23870 3' -53.7 NC_005262.1 + 43850 0.67 0.749461
Target:  5'- --cGCGGCggugCGccgGCAGGaCCUcGGCGCg -3'
miRNA:   3'- cuaCGUCGa---GCua-CGUUC-GGA-CUGCG- -5'
23870 3' -53.7 NC_005262.1 + 63365 0.67 0.749461
Target:  5'- cAUGC-GCUCGAaGCAaaacGGCUUuccGACGCa -3'
miRNA:   3'- cUACGuCGAGCUaCGU----UCGGA---CUGCG- -5'
23870 3' -53.7 NC_005262.1 + 59316 0.67 0.738876
Target:  5'- --gGCGGCUCGG-GCAugacgacGgCUGAUGCg -3'
miRNA:   3'- cuaCGUCGAGCUaCGUu------CgGACUGCG- -5'
23870 3' -53.7 NC_005262.1 + 15728 0.67 0.717386
Target:  5'- --gGCGGCUCGucgcgGCAGGUgCgaccGACGCg -3'
miRNA:   3'- cuaCGUCGAGCua---CGUUCG-Ga---CUGCG- -5'
23870 3' -53.7 NC_005262.1 + 46820 0.67 0.717386
Target:  5'- gGcgGCAGCagggcaauaUCGGUGCccGGCUUGGCGg -3'
miRNA:   3'- -CuaCGUCG---------AGCUACGu-UCGGACUGCg -5'
23870 3' -53.7 NC_005262.1 + 57708 0.67 0.717386
Target:  5'- cGUGCGGaucacCGAgaagaagGCcgcGGCCUGACGCa -3'
miRNA:   3'- cUACGUCga---GCUa------CGu--UCGGACUGCG- -5'
23870 3' -53.7 NC_005262.1 + 51045 0.67 0.717386
Target:  5'- uAUGCAGCggGAgGCGcAGCCacugaccgaUGACGCg -3'
miRNA:   3'- cUACGUCGagCUaCGU-UCGG---------ACUGCG- -5'
23870 3' -53.7 NC_005262.1 + 10443 0.68 0.706505
Target:  5'- cAUGCAgauGCUCG--GCAAGCCgGGCGg -3'
miRNA:   3'- cUACGU---CGAGCuaCGUUCGGaCUGCg -5'
23870 3' -53.7 NC_005262.1 + 61779 0.68 0.706505
Target:  5'- --aGCAGCaCGAaGCAGcGCCgUGGCGUg -3'
miRNA:   3'- cuaCGUCGaGCUaCGUU-CGG-ACUGCG- -5'
23870 3' -53.7 NC_005262.1 + 38325 0.68 0.706505
Target:  5'- cGUGCAGUuggCGAgcgGCAucGCCUcGCGCa -3'
miRNA:   3'- cUACGUCGa--GCUa--CGUu-CGGAcUGCG- -5'
23870 3' -53.7 NC_005262.1 + 16044 0.68 0.706505
Target:  5'- cGAUGCcgGGUUCGccGC-GGCCggcGGCGCa -3'
miRNA:   3'- -CUACG--UCGAGCuaCGuUCGGa--CUGCG- -5'
23870 3' -53.7 NC_005262.1 + 53003 0.68 0.684529
Target:  5'- cGcgGCAGCUCGcgcaGCAGuaccgcgcGCCcGGCGCg -3'
miRNA:   3'- -CuaCGUCGAGCua--CGUU--------CGGaCUGCG- -5'
23870 3' -53.7 NC_005262.1 + 49625 0.68 0.684529
Target:  5'- --aGCGGCUUGccGCAcuCCUcGGCGCg -3'
miRNA:   3'- cuaCGUCGAGCuaCGUucGGA-CUGCG- -5'
23870 3' -53.7 NC_005262.1 + 62230 0.68 0.673459
Target:  5'- -uUGCA-CUCGAUuCGAGCCU-ACGCa -3'
miRNA:   3'- cuACGUcGAGCUAcGUUCGGAcUGCG- -5'
23870 3' -53.7 NC_005262.1 + 20741 0.68 0.662348
Target:  5'- --cGCGGCgcgCGGUGCcGGCCgggucGAUGUa -3'
miRNA:   3'- cuaCGUCGa--GCUACGuUCGGa----CUGCG- -5'
23870 3' -53.7 NC_005262.1 + 27447 0.69 0.651208
Target:  5'- cGUGCcgaUCGAU-CAAGCCUGACGg -3'
miRNA:   3'- cUACGucgAGCUAcGUUCGGACUGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.