miRNA display CGI


Results 21 - 40 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23873 3' -56.7 NC_005262.1 + 34037 0.68 0.524874
Target:  5'- aCGCCG-GGCGguugaGGCGggUUaGCCGGGAg -3'
miRNA:   3'- -GCGGCgCUGU-----UCGCuuAGgUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 22130 0.74 0.233011
Target:  5'- uGCCgGCGGCGAuGaCGGcgCCGCCGGAAa -3'
miRNA:   3'- gCGG-CGCUGUU-C-GCUuaGGUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 30889 0.71 0.380156
Target:  5'- gCGUCGCG-CGuGCGAcgCCGCCGGc- -3'
miRNA:   3'- -GCGGCGCuGUuCGCUuaGGUGGCCuu -5'
23873 3' -56.7 NC_005262.1 + 36860 0.68 0.535332
Target:  5'- gGUCGCgGAUAggcGGCGAAUCCGgcUCGGGAu -3'
miRNA:   3'- gCGGCG-CUGU---UCGCUUAGGU--GGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 58946 1.06 0.001317
Target:  5'- gCGCCGCGACAAGCGAAUCCACCGGAAa -3'
miRNA:   3'- -GCGGCGCUGUUCGCUUAGGUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 6616 0.68 0.545863
Target:  5'- aGCgggaGCGACAcgagcGGCGAGgggUCGCCGGGGa -3'
miRNA:   3'- gCGg---CGCUGU-----UCGCUUa--GGUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 4813 0.68 0.545863
Target:  5'- aCGgCGCGGgAGGCGugaggCCGCCGGc- -3'
miRNA:   3'- -GCgGCGCUgUUCGCuua--GGUGGCCuu -5'
23873 3' -56.7 NC_005262.1 + 45199 0.71 0.371487
Target:  5'- gGCCuGCccucGCAGGCGGcauGUCCGCCGGGc -3'
miRNA:   3'- gCGG-CGc---UGUUCGCU---UAGGUGGCCUu -5'
23873 3' -56.7 NC_005262.1 + 5505 0.66 0.66432
Target:  5'- gGCCGCGACGAcCGG----ACCGGGAu -3'
miRNA:   3'- gCGGCGCUGUUcGCUuaggUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 48675 0.66 0.653508
Target:  5'- aGCUGcCGGCcAGCGcguUCCAgCCGGAc -3'
miRNA:   3'- gCGGC-GCUGuUCGCuu-AGGU-GGCCUu -5'
23873 3' -56.7 NC_005262.1 + 50964 0.69 0.504198
Target:  5'- aGCCGaCG-CAGGcCGAGUucUCGCCGGAGa -3'
miRNA:   3'- gCGGC-GCuGUUC-GCUUA--GGUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 25536 0.69 0.493993
Target:  5'- gCGUCGCGACGuccgugcgcGGCGGcacgAUCCACCGc-- -3'
miRNA:   3'- -GCGGCGCUGU---------UCGCU----UAGGUGGCcuu -5'
23873 3' -56.7 NC_005262.1 + 33876 0.69 0.463969
Target:  5'- aCGCCGCGcGCGAGaCGAucgugcGUCgGCCGGc- -3'
miRNA:   3'- -GCGGCGC-UGUUC-GCU------UAGgUGGCCuu -5'
23873 3' -56.7 NC_005262.1 + 42269 0.69 0.463969
Target:  5'- uGCgGCGACGAGCGGcacGggCACCGGc- -3'
miRNA:   3'- gCGgCGCUGUUCGCU---UagGUGGCCuu -5'
23873 3' -56.7 NC_005262.1 + 10811 0.71 0.36635
Target:  5'- uGCCGCGACGAucacgaccagcgcauGCGcGUCCGCCGc-- -3'
miRNA:   3'- gCGGCGCUGUU---------------CGCuUAGGUGGCcuu -5'
23873 3' -56.7 NC_005262.1 + 56955 0.67 0.631837
Target:  5'- -uCCGCG-CGGGCGAGUUCGCgGGc- -3'
miRNA:   3'- gcGGCGCuGUUCGCUUAGGUGgCCuu -5'
23873 3' -56.7 NC_005262.1 + 42082 0.67 0.631837
Target:  5'- cCGCCGgccaGAuCGAGaCG-AUCUACCGGAAc -3'
miRNA:   3'- -GCGGCg---CU-GUUC-GCuUAGGUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 31299 0.66 0.642677
Target:  5'- uCGCgGCGACAAuGgGucuGUCCGCCGa-- -3'
miRNA:   3'- -GCGgCGCUGUU-CgCu--UAGGUGGCcuu -5'
23873 3' -56.7 NC_005262.1 + 12118 0.66 0.653508
Target:  5'- cCGCCGUGcgcGCGAGCaGAUCgccgCGCUGGAGa -3'
miRNA:   3'- -GCGGCGC---UGUUCGcUUAG----GUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 1034 0.66 0.653508
Target:  5'- gGCCGUGGCGuucgacaauaGGCGcGAUCgGcCCGGAGc -3'
miRNA:   3'- gCGGCGCUGU----------UCGC-UUAGgU-GGCCUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.