miRNA display CGI


Results 1 - 20 of 281 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23873 5' -59.1 NC_005262.1 + 14551 0.66 0.549987
Target:  5'- uGCGCUggaucggcaGGCGucucGCCgcGGCGCUcACGCGc -3'
miRNA:   3'- gCGCGG---------CCGCuu--UGG--UCGCGA-UGCGC- -5'
23873 5' -59.1 NC_005262.1 + 14302 0.66 0.539685
Target:  5'- uGCGUggacgggagggCGGCGGAACCGccgaGCUGgGCGg -3'
miRNA:   3'- gCGCG-----------GCCGCUUUGGUcg--CGAUgCGC- -5'
23873 5' -59.1 NC_005262.1 + 12978 0.66 0.56035
Target:  5'- gGCGUCGaCGAccgcGACCcGCGCgugACGUGg -3'
miRNA:   3'- gCGCGGCcGCU----UUGGuCGCGa--UGCGC- -5'
23873 5' -59.1 NC_005262.1 + 49485 0.66 0.549987
Target:  5'- gCGCGCauucucCGGCGGugcGCgCAGCGCgauCGCc -3'
miRNA:   3'- -GCGCG------GCCGCUu--UG-GUCGCGau-GCGc -5'
23873 5' -59.1 NC_005262.1 + 43921 0.66 0.549987
Target:  5'- gGCGCCaaccGCGGccGACUAcaacaCGCUGCGCGa -3'
miRNA:   3'- gCGCGGc---CGCU--UUGGUc----GCGAUGCGC- -5'
23873 5' -59.1 NC_005262.1 + 63059 0.66 0.539685
Target:  5'- uGCGCCGGCacgucaucGCgGGCGagUAUGCGg -3'
miRNA:   3'- gCGCGGCCGcuu-----UGgUCGCg-AUGCGC- -5'
23873 5' -59.1 NC_005262.1 + 38708 0.66 0.549987
Target:  5'- uGC-CCGGCGAAGgCAGCaaauacccgacGCUcaGCGCu -3'
miRNA:   3'- gCGcGGCCGCUUUgGUCG-----------CGA--UGCGc -5'
23873 5' -59.1 NC_005262.1 + 17670 0.66 0.549987
Target:  5'- gCGCGCCgagcuggaagcGGCGAAgaaGCCGGcCGUgguCGCu -3'
miRNA:   3'- -GCGCGG-----------CCGCUU---UGGUC-GCGau-GCGc -5'
23873 5' -59.1 NC_005262.1 + 15456 0.66 0.548955
Target:  5'- aCGCGCgaaucgaUGuGCGAGAagcaCGGCGCUuacaccgaGCGCGg -3'
miRNA:   3'- -GCGCG-------GC-CGCUUUg---GUCGCGA--------UGCGC- -5'
23873 5' -59.1 NC_005262.1 + 12588 0.66 0.549987
Target:  5'- uGcCGCCGGCGAGGCgu-CGCggaugaGCGCGc -3'
miRNA:   3'- gC-GCGGCCGCUUUGgucGCGa-----UGCGC- -5'
23873 5' -59.1 NC_005262.1 + 61624 0.66 0.54689
Target:  5'- gCGCGCCugaaggagcucgagGGCGAGGaggaAGUGCUGuacCGCGg -3'
miRNA:   3'- -GCGCGG--------------CCGCUUUgg--UCGCGAU---GCGC- -5'
23873 5' -59.1 NC_005262.1 + 56956 0.66 0.549987
Target:  5'- cCGCGCgGGCGAGuucGCgGGCGUgguCgGCa -3'
miRNA:   3'- -GCGCGgCCGCUU---UGgUCGCGau-G-CGc -5'
23873 5' -59.1 NC_005262.1 + 27830 0.66 0.56035
Target:  5'- gCGCgGCCGGUcuGACUucaaGGUGCUGcCGCGu -3'
miRNA:   3'- -GCG-CGGCCGcuUUGG----UCGCGAU-GCGC- -5'
23873 5' -59.1 NC_005262.1 + 56338 0.66 0.539685
Target:  5'- aGCGuCUGGuCGAGGgCGGCGUgcccCGCGa -3'
miRNA:   3'- gCGC-GGCC-GCUUUgGUCGCGau--GCGC- -5'
23873 5' -59.1 NC_005262.1 + 50351 0.66 0.56035
Target:  5'- aGCGCCcGCGAcGACC-GCGagcgGCGCa -3'
miRNA:   3'- gCGCGGcCGCU-UUGGuCGCga--UGCGc -5'
23873 5' -59.1 NC_005262.1 + 44669 0.66 0.539685
Target:  5'- aGaCGCCGGCGAcgcGCCcGCGCccgauccgaACGUGg -3'
miRNA:   3'- gC-GCGGCCGCUu--UGGuCGCGa--------UGCGC- -5'
23873 5' -59.1 NC_005262.1 + 28161 0.66 0.56035
Target:  5'- aGCGCgCGGCGcAACUGcGCGCg--GCGg -3'
miRNA:   3'- gCGCG-GCCGCuUUGGU-CGCGaugCGC- -5'
23873 5' -59.1 NC_005262.1 + 45442 0.66 0.549987
Target:  5'- uGgGCgGGCucGGAACCAuCGCcgGCGCGg -3'
miRNA:   3'- gCgCGgCCG--CUUUGGUcGCGa-UGCGC- -5'
23873 5' -59.1 NC_005262.1 + 36005 0.66 0.539685
Target:  5'- aCGUGCCGcGCGAGuGCCGucgcaucaucGUGCcGCGUGg -3'
miRNA:   3'- -GCGCGGC-CGCUU-UGGU----------CGCGaUGCGC- -5'
23873 5' -59.1 NC_005262.1 + 61927 0.66 0.549987
Target:  5'- uGCGCCGGCucGAAACCaacgguucucaGGUGCaAUGuCGa -3'
miRNA:   3'- gCGCGGCCG--CUUUGG-----------UCGCGaUGC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.