miRNA display CGI


Results 1 - 20 of 281 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23873 5' -59.1 NC_005262.1 + 11228 0.73 0.234871
Target:  5'- cCGCGCCGagcucgacaGCGAcGAUC-GCGCUGCGCa -3'
miRNA:   3'- -GCGCGGC---------CGCU-UUGGuCGCGAUGCGc -5'
23873 5' -59.1 NC_005262.1 + 10808 0.74 0.186705
Target:  5'- aGCuGCCGcGaCGAucacGACCAGCGCaUGCGCGu -3'
miRNA:   3'- gCG-CGGC-C-GCU----UUGGUCGCG-AUGCGC- -5'
23873 5' -59.1 NC_005262.1 + 27558 0.74 0.20171
Target:  5'- aGCcCCGGCGAGgacGCC-GCGCaGCGCGa -3'
miRNA:   3'- gCGcGGCCGCUU---UGGuCGCGaUGCGC- -5'
23873 5' -59.1 NC_005262.1 + 50281 0.73 0.212286
Target:  5'- cCGCGCCGGCcGAGCCcGUgacgGCcGCGCGg -3'
miRNA:   3'- -GCGCGGCCGcUUUGGuCG----CGaUGCGC- -5'
23873 5' -59.1 NC_005262.1 + 20579 0.73 0.217751
Target:  5'- aGC-CCGGCGAG--CAGCGCgcgGCGCGc -3'
miRNA:   3'- gCGcGGCCGCUUugGUCGCGa--UGCGC- -5'
23873 5' -59.1 NC_005262.1 + 52711 0.73 0.217751
Target:  5'- cCGaCGCCGGaCGAGGCC-GCGCUGCuGaCGa -3'
miRNA:   3'- -GC-GCGGCC-GCUUUGGuCGCGAUG-C-GC- -5'
23873 5' -59.1 NC_005262.1 + 57 0.73 0.223336
Target:  5'- uGUGCCGGgGAGGCC-GCgGCU-CGCGa -3'
miRNA:   3'- gCGCGGCCgCUUUGGuCG-CGAuGCGC- -5'
23873 5' -59.1 NC_005262.1 + 62739 0.73 0.223336
Target:  5'- gCGCGCUGGCGG--UCAGCGCcGCaGCa -3'
miRNA:   3'- -GCGCGGCCGCUuuGGUCGCGaUG-CGc -5'
23873 5' -59.1 NC_005262.1 + 61160 0.73 0.234282
Target:  5'- uCGCGgCGGCGGgcgagcuGACgGGCGCgcgGCGCu -3'
miRNA:   3'- -GCGCgGCCGCU-------UUGgUCGCGa--UGCGc -5'
23873 5' -59.1 NC_005262.1 + 15143 0.74 0.186222
Target:  5'- uCGCgGCCGGCGucgagucggcgcGGAUguuggacggcacgCAGCGCUACGCGg -3'
miRNA:   3'- -GCG-CGGCCGC------------UUUG-------------GUCGCGAUGCGC- -5'
23873 5' -59.1 NC_005262.1 + 56909 0.74 0.181927
Target:  5'- aCGCucGCCGGCGAGAUCAaggccGCGCUcgagaaGCGCa -3'
miRNA:   3'- -GCG--CGGCCGCUUUGGU-----CGCGA------UGCGc -5'
23873 5' -59.1 NC_005262.1 + 56755 0.74 0.181927
Target:  5'- cCGCGCUGGCGucgggcGACgAGCGCUACa-- -3'
miRNA:   3'- -GCGCGGCCGCu-----UUGgUCGCGAUGcgc -5'
23873 5' -59.1 NC_005262.1 + 58885 0.77 0.115873
Target:  5'- gCGCGuuGGCuGcuGCC-GCGCUGCGCGa -3'
miRNA:   3'- -GCGCggCCG-CuuUGGuCGCGAUGCGC- -5'
23873 5' -59.1 NC_005262.1 + 11580 0.77 0.12563
Target:  5'- -aUGCCGGCGGcGGCCAGCGCUcgaGCGa -3'
miRNA:   3'- gcGCGGCCGCU-UUGGUCGCGAug-CGC- -5'
23873 5' -59.1 NC_005262.1 + 5176 0.76 0.132552
Target:  5'- aCG-GCCGGCGucGCgGGCGCggGCGCGg -3'
miRNA:   3'- -GCgCGGCCGCuuUGgUCGCGa-UGCGC- -5'
23873 5' -59.1 NC_005262.1 + 59263 0.76 0.132552
Target:  5'- aCGCGCagGaGCGAAACgAGCGCgucGCGCGg -3'
miRNA:   3'- -GCGCGg-C-CGCUUUGgUCGCGa--UGCGC- -5'
23873 5' -59.1 NC_005262.1 + 50045 0.75 0.155474
Target:  5'- gGCGCCGGCugcucccgagacGAAGCCGGagacgaaggcCGCUGCGCc -3'
miRNA:   3'- gCGCGGCCG------------CUUUGGUC----------GCGAUGCGc -5'
23873 5' -59.1 NC_005262.1 + 50101 0.75 0.155474
Target:  5'- cCGCGCCGcGCGAAcagaagccgGCCgAGCGCU-CGCu -3'
miRNA:   3'- -GCGCGGC-CGCUU---------UGG-UCGCGAuGCGc -5'
23873 5' -59.1 NC_005262.1 + 4816 0.75 0.172693
Target:  5'- aGCGCUGGUuucGCCGGCGCgACGCa -3'
miRNA:   3'- gCGCGGCCGcuuUGGUCGCGaUGCGc -5'
23873 5' -59.1 NC_005262.1 + 11651 0.74 0.179112
Target:  5'- gGCGCCGGCGucgcgcugcacgcuGGCCGGCagaGCUucGCGCGc -3'
miRNA:   3'- gCGCGGCCGCu-------------UUGGUCG---CGA--UGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.