miRNA display CGI


Results 1 - 20 of 281 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23873 5' -59.1 NC_005262.1 + 58983 1.09 0.000552
Target:  5'- uCGCGCCGGCGAAACCAGCGCUACGCGg -3'
miRNA:   3'- -GCGCGGCCGCUUUGGUCGCGAUGCGC- -5'
23873 5' -59.1 NC_005262.1 + 45262 0.8 0.076887
Target:  5'- cCGUGCCGGuCGggGCUauagcuucgaGGUGCUGCGCGc -3'
miRNA:   3'- -GCGCGGCC-GCuuUGG----------UCGCGAUGCGC- -5'
23873 5' -59.1 NC_005262.1 + 15755 0.79 0.083517
Target:  5'- aCGCGCUugcgGGCGcgGCCGGCuGCUGCGUGg -3'
miRNA:   3'- -GCGCGG----CCGCuuUGGUCG-CGAUGCGC- -5'
23873 5' -59.1 NC_005262.1 + 43858 0.79 0.090691
Target:  5'- uGCGCCGGCaGGACCucGGCGCgaucGCGCGc -3'
miRNA:   3'- gCGCGGCCGcUUUGG--UCGCGa---UGCGC- -5'
23873 5' -59.1 NC_005262.1 + 29640 0.79 0.09094
Target:  5'- uCGUGCCGGCGAcGGCCGGCGgguagacguagaagaUGCGCGg -3'
miRNA:   3'- -GCGCGGCCGCU-UUGGUCGCg--------------AUGCGC- -5'
23873 5' -59.1 NC_005262.1 + 38537 0.78 0.106827
Target:  5'- gGUGCCagaGGCGGcgcaggAGCCGGCGUUGCGCGc -3'
miRNA:   3'- gCGCGG---CCGCU------UUGGUCGCGAUGCGC- -5'
23873 5' -59.1 NC_005262.1 + 58885 0.77 0.115873
Target:  5'- gCGCGuuGGCuGcuGCC-GCGCUGCGCGa -3'
miRNA:   3'- -GCGCggCCG-CuuUGGuCGCGAUGCGC- -5'
23873 5' -59.1 NC_005262.1 + 11580 0.77 0.12563
Target:  5'- -aUGCCGGCGGcGGCCAGCGCUcgaGCGa -3'
miRNA:   3'- gcGCGGCCGCU-UUGGUCGCGAug-CGC- -5'
23873 5' -59.1 NC_005262.1 + 19099 0.76 0.129048
Target:  5'- uCGCGCgCGGCGAuGCCacguucggaucgGGCGCggGCGCGu -3'
miRNA:   3'- -GCGCG-GCCGCUuUGG------------UCGCGa-UGCGC- -5'
23873 5' -59.1 NC_005262.1 + 59263 0.76 0.132552
Target:  5'- aCGCGCagGaGCGAAACgAGCGCgucGCGCGg -3'
miRNA:   3'- -GCGCGg-C-CGCUUUGgUCGCGa--UGCGC- -5'
23873 5' -59.1 NC_005262.1 + 5176 0.76 0.132552
Target:  5'- aCG-GCCGGCGucGCgGGCGCggGCGCGg -3'
miRNA:   3'- -GCgCGGCCGCuuUGgUCGCGa-UGCGC- -5'
23873 5' -59.1 NC_005262.1 + 52816 0.76 0.139824
Target:  5'- gCGCGaCCGGCGuucCCGGCGCgccgaacaGCGCGa -3'
miRNA:   3'- -GCGC-GGCCGCuuuGGUCGCGa-------UGCGC- -5'
23873 5' -59.1 NC_005262.1 + 50045 0.75 0.155474
Target:  5'- gGCGCCGGCugcucccgagacGAAGCCGGagacgaaggcCGCUGCGCc -3'
miRNA:   3'- gCGCGGCCG------------CUUUGGUC----------GCGAUGCGc -5'
23873 5' -59.1 NC_005262.1 + 50101 0.75 0.155474
Target:  5'- cCGCGCCGcGCGAAcagaagccgGCCgAGCGCU-CGCu -3'
miRNA:   3'- -GCGCGGC-CGCUU---------UGG-UCGCGAuGCGc -5'
23873 5' -59.1 NC_005262.1 + 28247 0.75 0.159627
Target:  5'- cCGCGCCGGCGAgcGACaucGCGgCUugGCc -3'
miRNA:   3'- -GCGCGGCCGCU--UUGgu-CGC-GAugCGc -5'
23873 5' -59.1 NC_005262.1 + 52375 0.75 0.16388
Target:  5'- uCGCGCaccuuCGGCGGc-CCGGCGCgGCGCGg -3'
miRNA:   3'- -GCGCG-----GCCGCUuuGGUCGCGaUGCGC- -5'
23873 5' -59.1 NC_005262.1 + 38925 0.75 0.16561
Target:  5'- aCGCGCCGGCGGAugcacaucgccgagcACUGGCGCaGgGUGa -3'
miRNA:   3'- -GCGCGGCCGCUU---------------UGGUCGCGaUgCGC- -5'
23873 5' -59.1 NC_005262.1 + 20178 0.75 0.168235
Target:  5'- uGCGCCGGU---GCCGGCGagcgucacCUGCGCGa -3'
miRNA:   3'- gCGCGGCCGcuuUGGUCGC--------GAUGCGC- -5'
23873 5' -59.1 NC_005262.1 + 4831 0.75 0.168235
Target:  5'- gGcCGCCGGCG--GCCGGCugguucgacuGCUGCGCGc -3'
miRNA:   3'- gC-GCGGCCGCuuUGGUCG----------CGAUGCGC- -5'
23873 5' -59.1 NC_005262.1 + 4816 0.75 0.172693
Target:  5'- aGCGCUGGUuucGCCGGCGCgACGCa -3'
miRNA:   3'- gCGCGGCCGcuuUGGUCGCGaUGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.