miRNA display CGI


Results 1 - 20 of 281 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23873 5' -59.1 NC_005262.1 + 57 0.73 0.223336
Target:  5'- uGUGCCGGgGAGGCC-GCgGCU-CGCGa -3'
miRNA:   3'- gCGCGGCCgCUUUGGuCG-CGAuGCGC- -5'
23873 5' -59.1 NC_005262.1 + 194 0.72 0.259439
Target:  5'- gCGUGCCGGUGAcGAUccgCAGCGC-GCGCa -3'
miRNA:   3'- -GCGCGGCCGCU-UUG---GUCGCGaUGCGc -5'
23873 5' -59.1 NC_005262.1 + 213 0.7 0.337745
Target:  5'- gGgGgCGGCGGAGCCAGacaCGCUAcCGCc -3'
miRNA:   3'- gCgCgGCCGCUUUGGUC---GCGAU-GCGc -5'
23873 5' -59.1 NC_005262.1 + 243 0.68 0.460113
Target:  5'- gGCGgCGGCGGGACauuucGCGCggACGUa -3'
miRNA:   3'- gCGCgGCCGCUUUGgu---CGCGa-UGCGc -5'
23873 5' -59.1 NC_005262.1 + 1046 0.68 0.463949
Target:  5'- aCGUGCCgaaugcugcGGCGcugaccGCCAGCGCgccgaucagggugcgUGCGCGa -3'
miRNA:   3'- -GCGCGG---------CCGCuu----UGGUCGCG---------------AUGCGC- -5'
23873 5' -59.1 NC_005262.1 + 1160 0.67 0.523341
Target:  5'- cCGCGCgGGCuugccauccugcgcgGAAGcCCAGUGCgaguucgccGCGCGa -3'
miRNA:   3'- -GCGCGgCCG---------------CUUU-GGUCGCGa--------UGCGC- -5'
23873 5' -59.1 NC_005262.1 + 1277 0.66 0.56035
Target:  5'- --gGCCGGCGAuuuucGCCAGCaggACGCc -3'
miRNA:   3'- gcgCGGCCGCUu----UGGUCGcgaUGCGc -5'
23873 5' -59.1 NC_005262.1 + 1520 0.72 0.2659
Target:  5'- uGCGgCGGaacguauugcgUGAAcagcGCCAGCGUUGCGCGa -3'
miRNA:   3'- gCGCgGCC-----------GCUU----UGGUCGCGAUGCGC- -5'
23873 5' -59.1 NC_005262.1 + 1706 0.67 0.509198
Target:  5'- cCGCGgCGGCGAcGCaugaGGUcgagaaGCUACGCc -3'
miRNA:   3'- -GCGCgGCCGCUuUGg---UCG------CGAUGCGc -5'
23873 5' -59.1 NC_005262.1 + 2008 0.69 0.40471
Target:  5'- cCGCGCaGGCGAAAac-GCGCUggucggucgGCGCGu -3'
miRNA:   3'- -GCGCGgCCGCUUUgguCGCGA---------UGCGC- -5'
23873 5' -59.1 NC_005262.1 + 2049 0.66 0.569722
Target:  5'- gCGCGUa-GCGAgcaucccAGCCAGCG-UGCGCa -3'
miRNA:   3'- -GCGCGgcCGCU-------UUGGUCGCgAUGCGc -5'
23873 5' -59.1 NC_005262.1 + 2090 0.74 0.20171
Target:  5'- gCGCGCCGaGCGAAcCCGGCGCgcccugauCGUc -3'
miRNA:   3'- -GCGCGGC-CGCUUuGGUCGCGau------GCGc -5'
23873 5' -59.1 NC_005262.1 + 2479 0.67 0.519284
Target:  5'- uGCGCgUGGU---GCC-GCGCUugGCGa -3'
miRNA:   3'- gCGCG-GCCGcuuUGGuCGCGAugCGC- -5'
23873 5' -59.1 NC_005262.1 + 2844 0.7 0.361885
Target:  5'- gCGCGCUGGCGu-GCCcGCacgaGCUugGCc -3'
miRNA:   3'- -GCGCGGCCGCuuUGGuCG----CGAugCGc -5'
23873 5' -59.1 NC_005262.1 + 2975 0.68 0.44965
Target:  5'- gCGUagGCCGGCGcAAACucugcgaCAGCGgaACGCGc -3'
miRNA:   3'- -GCG--CGGCCGC-UUUG-------GUCGCgaUGCGC- -5'
23873 5' -59.1 NC_005262.1 + 3104 0.7 0.344862
Target:  5'- aCGCGCCcGCGAAgaagcccagcgucGCCAGCauGCcgaGCGCGa -3'
miRNA:   3'- -GCGCGGcCGCUU-------------UGGUCG--CGa--UGCGC- -5'
23873 5' -59.1 NC_005262.1 + 3244 0.71 0.279211
Target:  5'- aGCGCCGGCG---UCAGCGUgcccuUGCGg -3'
miRNA:   3'- gCGCGGCCGCuuuGGUCGCGau---GCGC- -5'
23873 5' -59.1 NC_005262.1 + 3301 0.68 0.450596
Target:  5'- uGCGCCGcGCGGc-CCGGCGUcuCGCc -3'
miRNA:   3'- gCGCGGC-CGCUuuGGUCGCGauGCGc -5'
23873 5' -59.1 NC_005262.1 + 3546 0.67 0.529449
Target:  5'- uGCGCCGGUcuuGCCGccGUGC-AUGCGg -3'
miRNA:   3'- gCGCGGCCGcuuUGGU--CGCGaUGCGC- -5'
23873 5' -59.1 NC_005262.1 + 3725 0.68 0.469735
Target:  5'- gCGCGUCGcGCG----CGGCGUUGCGCa -3'
miRNA:   3'- -GCGCGGC-CGCuuugGUCGCGAUGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.