miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23877 3' -52.9 NC_005262.1 + 42038 0.72 0.601605
Target:  5'- gCGACGUUGA-CGCgugCcgCUGCGCGa -3'
miRNA:   3'- aGCUGCAGCUaGCGaa-GuaGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 41264 0.67 0.855262
Target:  5'- aCGGCGgCGAUcaCGCagaUUCggCCGCGCGu -3'
miRNA:   3'- aGCUGCaGCUA--GCG---AAGuaGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 40463 0.66 0.871399
Target:  5'- cCGugGUCGAgCGCgugcUCGUgCGCGgCGc -3'
miRNA:   3'- aGCugCAGCUaGCGa---AGUAgGCGU-GC- -5'
23877 3' -52.9 NC_005262.1 + 40376 0.73 0.536013
Target:  5'- gCGACGUCGAcggccugUCuGCcgCGUUCGCGCGg -3'
miRNA:   3'- aGCUGCAGCU-------AG-CGaaGUAGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 40246 0.66 0.900699
Target:  5'- gCGGCGggCGGUUGgUcaGUCUGCGCGg -3'
miRNA:   3'- aGCUGCa-GCUAGCgAagUAGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 38751 0.66 0.900699
Target:  5'- cCGugGUgugCGAUCGUgUCGUgUCGCACu -3'
miRNA:   3'- aGCugCA---GCUAGCGaAGUA-GGCGUGc -5'
23877 3' -52.9 NC_005262.1 + 37873 0.67 0.855262
Target:  5'- gUCGGCGUCGcgCGUggcgacguacCAUgCGCGCu -3'
miRNA:   3'- -AGCUGCAGCuaGCGaa--------GUAgGCGUGc -5'
23877 3' -52.9 NC_005262.1 + 37251 0.67 0.838206
Target:  5'- gCG-CGUCGGcCGCUUCGgaguggCCGC-CGg -3'
miRNA:   3'- aGCuGCAGCUaGCGAAGUa-----GGCGuGC- -5'
23877 3' -52.9 NC_005262.1 + 34478 0.68 0.7723
Target:  5'- aCGGCGuUCGA--GCa-CAUCCGCGCGg -3'
miRNA:   3'- aGCUGC-AGCUagCGaaGUAGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 33250 0.69 0.720749
Target:  5'- gCGcACGUCGAgCGCUUCcugucgAUCCGCGa- -3'
miRNA:   3'- aGC-UGCAGCUaGCGAAG------UAGGCGUgc -5'
23877 3' -52.9 NC_005262.1 + 32837 0.68 0.782227
Target:  5'- gCGACGUCGGcgacaagGUUUCGgcCCGCACGu -3'
miRNA:   3'- aGCUGCAGCUag-----CGAAGUa-GGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 32747 0.67 0.846845
Target:  5'- gUCGGCGUCGGUCaGCacCAgcaggcgguacuUCCGCuCGa -3'
miRNA:   3'- -AGCUGCAGCUAG-CGaaGU------------AGGCGuGC- -5'
23877 3' -52.9 NC_005262.1 + 31586 0.68 0.7723
Target:  5'- cCGACGccggCGAUCGCaUCAccuucgaccucUCCGUGCa -3'
miRNA:   3'- aGCUGCa---GCUAGCGaAGU-----------AGGCGUGc -5'
23877 3' -52.9 NC_005262.1 + 31515 0.73 0.526526
Target:  5'- gUCGuACuUCGAacagCGCUUCAUCgGCACGu -3'
miRNA:   3'- -AGC-UGcAGCUa---GCGAAGUAGgCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 30995 0.69 0.76223
Target:  5'- cCGACGUCGAaCGCgauggCCgGCGCGc -3'
miRNA:   3'- aGCUGCAGCUaGCGaaguaGG-CGUGC- -5'
23877 3' -52.9 NC_005262.1 + 30924 0.71 0.612499
Target:  5'- uUCGACGcggCGAaCGC-UCGgcgCCGCACGu -3'
miRNA:   3'- -AGCUGCa--GCUaGCGaAGUa--GGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 30577 0.68 0.811047
Target:  5'- gUUGACGUCGGcaauguggCGCUcgUCGUCCuGCGuCGg -3'
miRNA:   3'- -AGCUGCAGCUa-------GCGA--AGUAGG-CGU-GC- -5'
23877 3' -52.9 NC_005262.1 + 30496 0.66 0.900699
Target:  5'- cUCGACGgcuUCGG-CGCccggCGUgCGCGCGa -3'
miRNA:   3'- -AGCUGC---AGCUaGCGaa--GUAgGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 29289 0.67 0.838206
Target:  5'- cCG-CGUCGucucgcagaaGUCGCgcgCcgCCGCGCGg -3'
miRNA:   3'- aGCuGCAGC----------UAGCGaa-GuaGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 28596 0.69 0.76223
Target:  5'- aCGGCGU-GAUcCGCUUCAUgCGCGg- -3'
miRNA:   3'- aGCUGCAgCUA-GCGAAGUAgGCGUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.