miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23877 3' -52.9 NC_005262.1 + 4404 0.67 0.838206
Target:  5'- gCGAUGUCGcgCGCcug--CUGCGCGa -3'
miRNA:   3'- aGCUGCAGCuaGCGaaguaGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 37251 0.67 0.838206
Target:  5'- gCG-CGUCGGcCGCUUCGgaguggCCGC-CGg -3'
miRNA:   3'- aGCuGCAGCUaGCGAAGUa-----GGCGuGC- -5'
23877 3' -52.9 NC_005262.1 + 37873 0.67 0.855262
Target:  5'- gUCGGCGUCGcgCGUggcgacguacCAUgCGCGCu -3'
miRNA:   3'- -AGCUGCAGCuaGCGaa--------GUAgGCGUGc -5'
23877 3' -52.9 NC_005262.1 + 40463 0.66 0.871399
Target:  5'- cCGugGUCGAgCGCgugcUCGUgCGCGgCGc -3'
miRNA:   3'- aGCugCAGCUaGCGa---AGUAgGCGU-GC- -5'
23877 3' -52.9 NC_005262.1 + 12664 0.7 0.710134
Target:  5'- aCGGCGUCGAgCGCcuugUCGaCCgGCGCGu -3'
miRNA:   3'- aGCUGCAGCUaGCGa---AGUaGG-CGUGC- -5'
23877 3' -52.9 NC_005262.1 + 30577 0.68 0.811047
Target:  5'- gUUGACGUCGGcaauguggCGCUcgUCGUCCuGCGuCGg -3'
miRNA:   3'- -AGCUGCAGCUa-------GCGA--AGUAGG-CGU-GC- -5'
23877 3' -52.9 NC_005262.1 + 11693 0.67 0.838206
Target:  5'- aCGGCGUCGc-CGaggUCGUCCGuCAUGg -3'
miRNA:   3'- aGCUGCAGCuaGCga-AGUAGGC-GUGC- -5'
23877 3' -52.9 NC_005262.1 + 9942 0.66 0.871399
Target:  5'- cUUGAgCG-CGAUCuGCUUgcCGUCCGCGCc -3'
miRNA:   3'- -AGCU-GCaGCUAG-CGAA--GUAGGCGUGc -5'
23877 3' -52.9 NC_005262.1 + 2331 0.68 0.820298
Target:  5'- -aGAUGUCGucuagCGCUUCgccGUCCGC-CGc -3'
miRNA:   3'- agCUGCAGCua---GCGAAG---UAGGCGuGC- -5'
23877 3' -52.9 NC_005262.1 + 7700 0.66 0.877584
Target:  5'- aCGcAUGUCGAUCGCcgagaaacggcCGUCCGCGa- -3'
miRNA:   3'- aGC-UGCAGCUAGCGaa---------GUAGGCGUgc -5'
23877 3' -52.9 NC_005262.1 + 60040 0.67 0.838206
Target:  5'- gUCGAagggcUCGAUCGCcugagCCGCGCGg -3'
miRNA:   3'- -AGCUgc---AGCUAGCGaaguaGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 42628 0.67 0.829354
Target:  5'- gCGAuCGUCGcUCGCUUUGUCaCGUucGCGu -3'
miRNA:   3'- aGCU-GCAGCuAGCGAAGUAG-GCG--UGC- -5'
23877 3' -52.9 NC_005262.1 + 29289 0.67 0.838206
Target:  5'- cCG-CGUCGucucgcagaaGUCGCgcgCcgCCGCGCGg -3'
miRNA:   3'- aGCuGCAGC----------UAGCGaa-GuaGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 32747 0.67 0.846845
Target:  5'- gUCGGCGUCGGUCaGCacCAgcaggcgguacuUCCGCuCGa -3'
miRNA:   3'- -AGCUGCAGCUAG-CGaaGU------------AGGCGuGC- -5'
23877 3' -52.9 NC_005262.1 + 20081 0.67 0.855262
Target:  5'- uUCGACcuucuuGUCGGUgagCGCgUCG-CCGCGCGa -3'
miRNA:   3'- -AGCUG------CAGCUA---GCGaAGUaGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 7638 0.66 0.868248
Target:  5'- aCGGCGUCGAUCaucugguucagcuuGCUguucgggUCGcUCgGCGCGg -3'
miRNA:   3'- aGCUGCAGCUAG--------------CGA-------AGU-AGgCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 30924 0.71 0.612499
Target:  5'- uUCGACGcggCGAaCGC-UCGgcgCCGCACGu -3'
miRNA:   3'- -AGCUGCa--GCUaGCGaAGUa--GGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 57154 0.7 0.699444
Target:  5'- gCGACG-CGAUCGaagcgCcgCCGCACa -3'
miRNA:   3'- aGCUGCaGCUAGCgaa--GuaGGCGUGc -5'
23877 3' -52.9 NC_005262.1 + 18628 0.69 0.76223
Target:  5'- --cAUGUUGAUCGC---GUCCGCACGc -3'
miRNA:   3'- agcUGCAGCUAGCGaagUAGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 4530 0.68 0.782227
Target:  5'- gCGACG-CGcUCGUUUCGcUCCuGCGCGu -3'
miRNA:   3'- aGCUGCaGCuAGCGAAGU-AGG-CGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.