miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23879 5' -53.7 NC_005262.1 + 63274 0.66 0.83698
Target:  5'- aGCCGCCGCcuGC-UUGAcggCCGGcUGCu -3'
miRNA:   3'- -CGGCGGCG--UGuAGCUuaaGGUCcACG- -5'
23879 5' -53.7 NC_005262.1 + 62563 0.71 0.544704
Target:  5'- cGCCGaaGCACuUCGGA---CGGGUGCg -3'
miRNA:   3'- -CGGCggCGUGuAGCUUaagGUCCACG- -5'
23879 5' -53.7 NC_005262.1 + 61915 0.7 0.620732
Target:  5'- -aCGCCGCAgGgcugcgccggcUCGAaaccaacgGUUCuCAGGUGCa -3'
miRNA:   3'- cgGCGGCGUgU-----------AGCU--------UAAG-GUCCACG- -5'
23879 5' -53.7 NC_005262.1 + 61043 0.66 0.828054
Target:  5'- cGCCGCCGUGC--UGAAgcgcaUCCGGGaccucgagGCg -3'
miRNA:   3'- -CGGCGGCGUGuaGCUUa----AGGUCCa-------CG- -5'
23879 5' -53.7 NC_005262.1 + 60055 0.67 0.798162
Target:  5'- cGCCugaGCCGCGCGgaacccaUCCAGGcGCa -3'
miRNA:   3'- -CGG---CGGCGUGUagcuua-AGGUCCaCG- -5'
23879 5' -53.7 NC_005262.1 + 59002 0.74 0.39165
Target:  5'- cGCCGUCGCGCuUCGAccgucugcaagCCGcGGUGCa -3'
miRNA:   3'- -CGGCGGCGUGuAGCUuaa--------GGU-CCACG- -5'
23879 5' -53.7 NC_005262.1 + 58895 0.68 0.707946
Target:  5'- uGCUGCCGCGCugcgCGA---UCAGGccgGCg -3'
miRNA:   3'- -CGGCGGCGUGua--GCUuaaGGUCCa--CG- -5'
23879 5' -53.7 NC_005262.1 + 58673 0.66 0.828054
Target:  5'- cGCCGcCCGUcgcgcauggcagGCAUCGugaaCCGGGcGCg -3'
miRNA:   3'- -CGGC-GGCG------------UGUAGCuuaaGGUCCaCG- -5'
23879 5' -53.7 NC_005262.1 + 58621 0.66 0.851658
Target:  5'- -gCGCUGCACcgucaggcucggcaGUCGAGcggCCGGGcGCg -3'
miRNA:   3'- cgGCGGCGUG--------------UAGCUUaa-GGUCCaCG- -5'
23879 5' -53.7 NC_005262.1 + 58538 0.68 0.750127
Target:  5'- uGCUGCUGCACGagGcGUUCCaccaAGGcgGCg -3'
miRNA:   3'- -CGGCGGCGUGUagCuUAAGG----UCCa-CG- -5'
23879 5' -53.7 NC_005262.1 + 58204 0.67 0.800085
Target:  5'- cGCCGCCGCGguguacUCGAAggaucacUUCAGGUucguGCg -3'
miRNA:   3'- -CGGCGGCGUgu----AGCUUa------AGGUCCA----CG- -5'
23879 5' -53.7 NC_005262.1 + 57669 0.73 0.465918
Target:  5'- gGCCG-CGCACAUCGAggcgacugugccgccGUUCCGcaacGUGCg -3'
miRNA:   3'- -CGGCgGCGUGUAGCU---------------UAAGGUc---CACG- -5'
23879 5' -53.7 NC_005262.1 + 57311 0.66 0.845692
Target:  5'- cGCCGCaucgaGCAgAUCGGcaaccgUCUGGGcGCg -3'
miRNA:   3'- -CGGCGg----CGUgUAGCUua----AGGUCCaCG- -5'
23879 5' -53.7 NC_005262.1 + 57169 1.15 0.000689
Target:  5'- cGCCGCCGCACAUCGAAUUCCAGGUGCa -3'
miRNA:   3'- -CGGCGGCGUGUAGCUUAAGGUCCACG- -5'
23879 5' -53.7 NC_005262.1 + 56990 0.69 0.675496
Target:  5'- aCCGCCuacgacaaGCGCGaCGAGUUCuCGGGcGCg -3'
miRNA:   3'- cGGCGG--------CGUGUaGCUUAAG-GUCCaCG- -5'
23879 5' -53.7 NC_005262.1 + 56949 0.72 0.492261
Target:  5'- cGCCGauCCGCGCGggCGAGUUCgCGGGcGUg -3'
miRNA:   3'- -CGGC--GGCGUGUa-GCUUAAG-GUCCaCG- -5'
23879 5' -53.7 NC_005262.1 + 56816 0.71 0.555423
Target:  5'- cGUCGCCGUACuucacCGAAUUCgAGcUGCa -3'
miRNA:   3'- -CGGCGGCGUGua---GCUUAAGgUCcACG- -5'
23879 5' -53.7 NC_005262.1 + 54623 0.68 0.718631
Target:  5'- cGCCGaCCGC-CAUgcgUGAAggcgCCGGGUGa -3'
miRNA:   3'- -CGGC-GGCGuGUA---GCUUaa--GGUCCACg -5'
23879 5' -53.7 NC_005262.1 + 54479 0.68 0.739732
Target:  5'- aCUGCCGC-CAUUuucGUUCCAGGcGCc -3'
miRNA:   3'- cGGCGGCGuGUAGcu-UAAGGUCCaCG- -5'
23879 5' -53.7 NC_005262.1 + 54276 0.67 0.786478
Target:  5'- cCCGCCGCGCAuauugaaaagcggUCGGg--CCGcaaaucgcaccaguGGUGCg -3'
miRNA:   3'- cGGCGGCGUGU-------------AGCUuaaGGU--------------CCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.