miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23879 5' -53.7 NC_005262.1 + 51148 0.66 0.83698
Target:  5'- cGCgCGCCGCGCG-CGcuucUUCUucacGGUGCc -3'
miRNA:   3'- -CG-GCGGCGUGUaGCuu--AAGGu---CCACG- -5'
23879 5' -53.7 NC_005262.1 + 54479 0.68 0.739732
Target:  5'- aCUGCCGC-CAUUuucGUUCCAGGcGCc -3'
miRNA:   3'- cGGCGGCGuGUAGcu-UAAGGUCCaCG- -5'
23879 5' -53.7 NC_005262.1 + 49592 0.68 0.738686
Target:  5'- cCCGCCGUcagugccGCGUgGAGUUCCGGaUGg -3'
miRNA:   3'- cGGCGGCG-------UGUAgCUUAAGGUCcACg -5'
23879 5' -53.7 NC_005262.1 + 57169 1.15 0.000689
Target:  5'- cGCCGCCGCACAUCGAAUUCCAGGUGCa -3'
miRNA:   3'- -CGGCGGCGUGUAGCUUAAGGUCCACG- -5'
23879 5' -53.7 NC_005262.1 + 15259 0.66 0.828054
Target:  5'- gGCUcCUGCGCAUCGAgacgcgAUUgCAGGUcgaGCg -3'
miRNA:   3'- -CGGcGGCGUGUAGCU------UAAgGUCCA---CG- -5'
23879 5' -53.7 NC_005262.1 + 42225 0.67 0.809596
Target:  5'- aGCCguaGCCGC-CcUCGu-UUCCAGGcgGCg -3'
miRNA:   3'- -CGG---CGGCGuGuAGCuuAAGGUCCa-CG- -5'
23879 5' -53.7 NC_005262.1 + 20738 0.67 0.809596
Target:  5'- uGCCGCgGCGCG-CGGugccggCCGGGUc- -3'
miRNA:   3'- -CGGCGgCGUGUaGCUuaa---GGUCCAcg -5'
23879 5' -53.7 NC_005262.1 + 10852 0.67 0.809596
Target:  5'- uGCCGCCGg----CGAAgcCCAGGcgGCg -3'
miRNA:   3'- -CGGCGGCguguaGCUUaaGGUCCa-CG- -5'
23879 5' -53.7 NC_005262.1 + 20104 0.67 0.797197
Target:  5'- cGUCGCCGCGCGaauUCGgcccggcuuggcuuGcgUUCAGGUcGCc -3'
miRNA:   3'- -CGGCGGCGUGU---AGC--------------UuaAGGUCCA-CG- -5'
23879 5' -53.7 NC_005262.1 + 9473 0.68 0.750127
Target:  5'- uGCCGa-GCGCGUCGAugacgUCCuGGcgGCu -3'
miRNA:   3'- -CGGCggCGUGUAGCUua---AGGuCCa-CG- -5'
23879 5' -53.7 NC_005262.1 + 36974 0.67 0.770546
Target:  5'- cCCGUCGCgGCcUCGAAUUCCGa-UGCa -3'
miRNA:   3'- cGGCGGCG-UGuAGCUUAAGGUccACG- -5'
23879 5' -53.7 NC_005262.1 + 60055 0.67 0.798162
Target:  5'- cGCCugaGCCGCGCGgaacccaUCCAGGcGCa -3'
miRNA:   3'- -CGG---CGGCGUGUagcuua-AGGUCCaCG- -5'
23879 5' -53.7 NC_005262.1 + 33388 0.66 0.828054
Target:  5'- cGCCGUccagCGCACGcggcUCGugcuGUacUCgGGGUGCg -3'
miRNA:   3'- -CGGCG----GCGUGU----AGCu---UA--AGgUCCACG- -5'
23879 5' -53.7 NC_005262.1 + 6351 0.67 0.770546
Target:  5'- cGCCGCCGCGgCAUCcgcggaC-GGUGCc -3'
miRNA:   3'- -CGGCGGCGU-GUAGcuuaagGuCCACG- -5'
23879 5' -53.7 NC_005262.1 + 61043 0.66 0.828054
Target:  5'- cGCCGCCGUGC--UGAAgcgcaUCCGGGaccucgagGCg -3'
miRNA:   3'- -CGGCGGCGUGuaGCUUa----AGGUCCa-------CG- -5'
23879 5' -53.7 NC_005262.1 + 58204 0.67 0.800085
Target:  5'- cGCCGCCGCGguguacUCGAAggaucacUUCAGGUucguGCg -3'
miRNA:   3'- -CGGCGGCGUgu----AGCUUa------AGGUCCA----CG- -5'
23879 5' -53.7 NC_005262.1 + 27684 0.68 0.750127
Target:  5'- cGCCGUauCGCGCAgcgUCGAAgaUCAGGUcaaagGCa -3'
miRNA:   3'- -CGGCG--GCGUGU---AGCUUaaGGUCCA-----CG- -5'
23879 5' -53.7 NC_005262.1 + 48313 0.68 0.739732
Target:  5'- aGCCGCCGCGC-UCGGuguaagcgCC--GUGCu -3'
miRNA:   3'- -CGGCGGCGUGuAGCUuaa-----GGucCACG- -5'
23879 5' -53.7 NC_005262.1 + 58673 0.66 0.828054
Target:  5'- cGCCGcCCGUcgcgcauggcagGCAUCGugaaCCGGGcGCg -3'
miRNA:   3'- -CGGC-GGCG------------UGUAGCuuaaGGUCCaCG- -5'
23879 5' -53.7 NC_005262.1 + 23646 0.67 0.809596
Target:  5'- -aCGCCGCACccug---UCCGGGUuGCa -3'
miRNA:   3'- cgGCGGCGUGuagcuuaAGGUCCA-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.