miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23887 5' -59.9 NC_005262.1 + 45913 0.66 0.567276
Target:  5'- cGGGCGGuGCUcGAUgUGCGUuccgugguCGACCucguagcugucgacgGCCg -3'
miRNA:   3'- -CCUGCC-CGA-CUAgACGCG--------GCUGG---------------CGG- -5'
23887 5' -59.9 NC_005262.1 + 30954 0.66 0.563162
Target:  5'- -uGCGGGCcGAaaccUUGuCGCCGACguCGCCg -3'
miRNA:   3'- ccUGCCCGaCUa---GAC-GCGGCUG--GCGG- -5'
23887 5' -59.9 NC_005262.1 + 53251 0.66 0.563162
Target:  5'- -cGCGcGGCcGGUC-GCGUCGGCauaGCCg -3'
miRNA:   3'- ccUGC-CCGaCUAGaCGCGGCUGg--CGG- -5'
23887 5' -59.9 NC_005262.1 + 18396 0.66 0.563162
Target:  5'- -uGCGcGGCUGc-CUGCuGCUGcGCCGCCc -3'
miRNA:   3'- ccUGC-CCGACuaGACG-CGGC-UGGCGG- -5'
23887 5' -59.9 NC_005262.1 + 15416 0.66 0.563162
Target:  5'- aGGCGcGGUcguaacccGA-CUGauaGCCGGCCGCCa -3'
miRNA:   3'- cCUGC-CCGa-------CUaGACg--CGGCUGGCGG- -5'
23887 5' -59.9 NC_005262.1 + 28187 0.66 0.562134
Target:  5'- cGGACGa-CUGcaacgccAUCUGUGCCGAgcCCGCg -3'
miRNA:   3'- -CCUGCccGAC-------UAGACGCGGCU--GGCGg -5'
23887 5' -59.9 NC_005262.1 + 40476 0.66 0.552911
Target:  5'- uGGGcCGGGCUGGuaUCUG-GCgGACgGgCa -3'
miRNA:   3'- -CCU-GCCCGACU--AGACgCGgCUGgCgG- -5'
23887 5' -59.9 NC_005262.1 + 28163 0.66 0.552911
Target:  5'- -cGCGcGGCgcaaCUGCGCgCGGCgGCCg -3'
miRNA:   3'- ccUGC-CCGacuaGACGCG-GCUGgCGG- -5'
23887 5' -59.9 NC_005262.1 + 61006 0.66 0.552911
Target:  5'- uGACGGacauGCUGAUCgacgacaaggaUGCGgcacCCG-CCGCCg -3'
miRNA:   3'- cCUGCC----CGACUAG-----------ACGC----GGCuGGCGG- -5'
23887 5' -59.9 NC_005262.1 + 58593 0.66 0.552911
Target:  5'- aGGAUacGCccucGGUC-GCGCCGGCCGCg -3'
miRNA:   3'- -CCUGccCGa---CUAGaCGCGGCUGGCGg -5'
23887 5' -59.9 NC_005262.1 + 9935 0.66 0.55189
Target:  5'- cGGCcGGCUugagcgcGAUCUGCuuGCCGuCCGCg -3'
miRNA:   3'- cCUGcCCGA-------CUAGACG--CGGCuGGCGg -5'
23887 5' -59.9 NC_005262.1 + 62719 0.66 0.549847
Target:  5'- cGGuACGGGUUGGcagcUCUucuuugucggcuccGgGCCGAUCGCg -3'
miRNA:   3'- -CC-UGCCCGACU----AGA--------------CgCGGCUGGCGg -5'
23887 5' -59.9 NC_005262.1 + 57284 0.66 0.542718
Target:  5'- uGAC-GGCgaGGUCggcGCGCUGAUCGUCg -3'
miRNA:   3'- cCUGcCCGa-CUAGa--CGCGGCUGGCGG- -5'
23887 5' -59.9 NC_005262.1 + 22240 0.66 0.542718
Target:  5'- uGGGCGuGGCccgGAUCguacaCGCUGugCGCa -3'
miRNA:   3'- -CCUGC-CCGa--CUAGac---GCGGCugGCGg -5'
23887 5' -59.9 NC_005262.1 + 15113 0.66 0.542718
Target:  5'- cGGCGuccGGCUGGaacGCGCUGGCCGgCa -3'
miRNA:   3'- cCUGC---CCGACUagaCGCGGCUGGCgG- -5'
23887 5' -59.9 NC_005262.1 + 6644 0.66 0.542718
Target:  5'- cGGCGGcGCUucGAUC-GCGUCG-CCGUCc -3'
miRNA:   3'- cCUGCC-CGA--CUAGaCGCGGCuGGCGG- -5'
23887 5' -59.9 NC_005262.1 + 18951 0.66 0.542718
Target:  5'- -cGCGGGCccacgauucgccUGAUcCUGCGUCGcgaGCUGCUg -3'
miRNA:   3'- ccUGCCCG------------ACUA-GACGCGGC---UGGCGG- -5'
23887 5' -59.9 NC_005262.1 + 13397 0.66 0.532587
Target:  5'- -cGCGGcGCUGAUCgccGCGCgGuucgcgUCGCCa -3'
miRNA:   3'- ccUGCC-CGACUAGa--CGCGgCu-----GGCGG- -5'
23887 5' -59.9 NC_005262.1 + 42151 0.66 0.532587
Target:  5'- cGGcgcCGGGCccGGUC-GCgGCCGAUCGUCu -3'
miRNA:   3'- -CCu--GCCCGa-CUAGaCG-CGGCUGGCGG- -5'
23887 5' -59.9 NC_005262.1 + 26676 0.66 0.529561
Target:  5'- aGGC-GGCUGAUCgcgaaagGUGCCGAUauugcggaacgugaCGCCc -3'
miRNA:   3'- cCUGcCCGACUAGa------CGCGGCUG--------------GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.