Results 1 - 20 of 149 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23888 | 5' | -57.6 | NC_005262.1 | + | 33635 | 0.66 | 0.612861 |
Target: 5'- cGCCgGCGCAGgugucCGaGGCUgacgagCGCGCCUc -3' miRNA: 3'- aCGG-CGUGUUac---GC-CCGAa-----GCGUGGG- -5' |
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23888 | 5' | -57.6 | NC_005262.1 | + | 5178 | 0.66 | 0.591358 |
Target: 5'- gGCCG-GCGucGCGGGCgcgggCGCGgCCg -3' miRNA: 3'- aCGGCgUGUuaCGCCCGaa---GCGUgGG- -5' |
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23888 | 5' | -57.6 | NC_005262.1 | + | 3987 | 0.66 | 0.634429 |
Target: 5'- cGUgGCGCc-UGCGGGCcg-GUGCCCu -3' miRNA: 3'- aCGgCGUGuuACGCCCGaagCGUGGG- -5' |
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23888 | 5' | -57.6 | NC_005262.1 | + | 34770 | 0.66 | 0.617172 |
Target: 5'- cGCCGCuCGAgcucgGCGgaucggugaagguguGGCUUCGC-CUCa -3' miRNA: 3'- aCGGCGuGUUa----CGC---------------CCGAAGCGuGGG- -5' |
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23888 | 5' | -57.6 | NC_005262.1 | + | 11729 | 0.66 | 0.591358 |
Target: 5'- gUGuuGCGC-AUGCucGGCUUCGCGaucuUCCu -3' miRNA: 3'- -ACggCGUGuUACGc-CCGAAGCGU----GGG- -5' |
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23888 | 5' | -57.6 | NC_005262.1 | + | 45683 | 0.66 | 0.590285 |
Target: 5'- gUGCCGCACuucGUGCgcaucgaGGGCcg-GCAgCCg -3' miRNA: 3'- -ACGGCGUGu--UACG-------CCCGaagCGUgGG- -5' |
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23888 | 5' | -57.6 | NC_005262.1 | + | 5659 | 0.66 | 0.617172 |
Target: 5'- aUGCCGCGCAccAU-CGGGagguacugcaccaUCGgCACCCa -3' miRNA: 3'- -ACGGCGUGU--UAcGCCCga-----------AGC-GUGGG- -5' |
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23888 | 5' | -57.6 | NC_005262.1 | + | 8204 | 0.66 | 0.611784 |
Target: 5'- cGCCGCAgCGAUgauccgcGCGGGCcaugaGCugUCg -3' miRNA: 3'- aCGGCGU-GUUA-------CGCCCGaag--CGugGG- -5' |
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23888 | 5' | -57.6 | NC_005262.1 | + | 24940 | 0.66 | 0.634429 |
Target: 5'- aUG-CGCAC-AUGCcGcGCggCGCGCCCa -3' miRNA: 3'- -ACgGCGUGuUACGcC-CGaaGCGUGGG- -5' |
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23888 | 5' | -57.6 | NC_005262.1 | + | 52725 | 0.66 | 0.611784 |
Target: 5'- gGCCGCGC--UGCugacgaaguucacGGGCUgggGCGCCa -3' miRNA: 3'- aCGGCGUGuuACG-------------CCCGAag-CGUGGg -5' |
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23888 | 5' | -57.6 | NC_005262.1 | + | 11417 | 0.66 | 0.591358 |
Target: 5'- cGCCGCGCcgggccgccgaaGGUGCGcGacacgcCGCGCCCg -3' miRNA: 3'- aCGGCGUG------------UUACGCcCgaa---GCGUGGG- -5' |
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23888 | 5' | -57.6 | NC_005262.1 | + | 56753 | 0.66 | 0.602097 |
Target: 5'- cGCCGCGCuggcGuCGGGCgacgaGCGCUa -3' miRNA: 3'- aCGGCGUGuua-C-GCCCGaag--CGUGGg -5' |
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23888 | 5' | -57.6 | NC_005262.1 | + | 40467 | 0.66 | 0.612861 |
Target: 5'- gGCCGUGCAuggGcCGGGCUg-GUAUCUg -3' miRNA: 3'- aCGGCGUGUua-C-GCCCGAagCGUGGG- -5' |
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23888 | 5' | -57.6 | NC_005262.1 | + | 58735 | 0.66 | 0.634429 |
Target: 5'- cGCCGC-CGccGCGGGCcugCcCGCCg -3' miRNA: 3'- aCGGCGuGUuaCGCCCGaa-GcGUGGg -5' |
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23888 | 5' | -57.6 | NC_005262.1 | + | 41163 | 0.66 | 0.627956 |
Target: 5'- aGCgCGCGCAGga-GGGCaccgccgcgaucgcgUgCGCGCCCg -3' miRNA: 3'- aCG-GCGUGUUacgCCCG---------------AaGCGUGGG- -5' |
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23888 | 5' | -57.6 | NC_005262.1 | + | 17061 | 0.66 | 0.634429 |
Target: 5'- cGUCGCGCGca-CGGcGCcgauaggCGCGCCCg -3' miRNA: 3'- aCGGCGUGUuacGCC-CGaa-----GCGUGGG- -5' |
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23888 | 5' | -57.6 | NC_005262.1 | + | 34204 | 0.66 | 0.602097 |
Target: 5'- cUGCCGCccGCGAU-CGcGGCUUCGgGCg- -3' miRNA: 3'- -ACGGCG--UGUUAcGC-CCGAAGCgUGgg -5' |
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23888 | 5' | -57.6 | NC_005262.1 | + | 50501 | 0.66 | 0.623642 |
Target: 5'- gGCCGC-CAAUGCuGGaacCGCugUCa -3' miRNA: 3'- aCGGCGuGUUACGcCCgaaGCGugGG- -5' |
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23888 | 5' | -57.6 | NC_005262.1 | + | 60822 | 0.66 | 0.634429 |
Target: 5'- gGCCGauugccCGAUGcCGGGCagCGUgaguGCCCg -3' miRNA: 3'- aCGGCgu----GUUAC-GCCCGaaGCG----UGGG- -5' |
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23888 | 5' | -57.6 | NC_005262.1 | + | 59700 | 0.66 | 0.612861 |
Target: 5'- gUGCCGC-CAc-GCGGGCgcuaCGuCGCCg -3' miRNA: 3'- -ACGGCGuGUuaCGCCCGaa--GC-GUGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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