miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23888 5' -57.6 NC_005262.1 + 909 0.67 0.548808
Target:  5'- cGgCGCGCug-GCGGGUgauggUGuCGCCCa -3'
miRNA:   3'- aCgGCGUGuuaCGCCCGaa---GC-GUGGG- -5'
23888 5' -57.6 NC_005262.1 + 1137 0.75 0.196684
Target:  5'- gGCCGC----UGCGGGCUUCgauGCugCCg -3'
miRNA:   3'- aCGGCGuguuACGCCCGAAG---CGugGG- -5'
23888 5' -57.6 NC_005262.1 + 1458 0.66 0.634429
Target:  5'- gGCUGCAUggUGCGGcacagUGCgaaACCCg -3'
miRNA:   3'- aCGGCGUGuuACGCCcgaa-GCG---UGGG- -5'
23888 5' -57.6 NC_005262.1 + 2760 0.71 0.317731
Target:  5'- cGCUucaGCACGGcgGCGGGUgcCGCAUCCu -3'
miRNA:   3'- aCGG---CGUGUUa-CGCCCGaaGCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 2940 0.67 0.527882
Target:  5'- cGCCGCGCAuUGCcucGGCcaUCGcCACgCCg -3'
miRNA:   3'- aCGGCGUGUuACGc--CCGa-AGC-GUG-GG- -5'
23888 5' -57.6 NC_005262.1 + 3170 0.67 0.527882
Target:  5'- cGCCGCucgcCAgcGUGCGcauGGCgUUCGCcguGCCCu -3'
miRNA:   3'- aCGGCGu---GU--UACGC---CCG-AAGCG---UGGG- -5'
23888 5' -57.6 NC_005262.1 + 3373 0.75 0.176973
Target:  5'- aUGCCGCACGAUGCuauGCgcccCGUGCCCg -3'
miRNA:   3'- -ACGGCGUGUUACGcc-CGaa--GCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 3675 0.68 0.50726
Target:  5'- cGCCGCGac--GCuGGCgcccUCGUGCCCg -3'
miRNA:   3'- aCGGCGUguuaCGcCCGa---AGCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 3800 0.71 0.357707
Target:  5'- cGCCGCGCAucaucucgaggAU-CGGGUgcaugCGCGCCUg -3'
miRNA:   3'- aCGGCGUGU-----------UAcGCCCGaa---GCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 3987 0.66 0.634429
Target:  5'- cGUgGCGCc-UGCGGGCcg-GUGCCCu -3'
miRNA:   3'- aCGgCGUGuuACGCCCGaagCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 4582 0.69 0.41934
Target:  5'- gGCgGCGCugcuCGGGCgugaGCGCCCg -3'
miRNA:   3'- aCGgCGUGuuacGCCCGaag-CGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 4936 0.69 0.413808
Target:  5'- -cCCGCACGuguUGCGGGCccucaucgaccaggaUUCGCAuaaUCCg -3'
miRNA:   3'- acGGCGUGUu--ACGCCCG---------------AAGCGU---GGG- -5'
23888 5' -57.6 NC_005262.1 + 5079 0.7 0.383331
Target:  5'- gGCgGCGC-GUGCGaccggcucGGCggugCGCGCCCg -3'
miRNA:   3'- aCGgCGUGuUACGC--------CCGaa--GCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 5116 0.68 0.521661
Target:  5'- uUGCgCGCucGCAAcGCGGGCUcgggcUugaucguagaacucgCGCGCCCg -3'
miRNA:   3'- -ACG-GCG--UGUUaCGCCCGA-----A---------------GCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 5178 0.66 0.591358
Target:  5'- gGCCG-GCGucGCGGGCgcgggCGCGgCCg -3'
miRNA:   3'- aCGGCgUGUuaCGCCCGaa---GCGUgGG- -5'
23888 5' -57.6 NC_005262.1 + 5659 0.66 0.617172
Target:  5'- aUGCCGCGCAccAU-CGGGagguacugcaccaUCGgCACCCa -3'
miRNA:   3'- -ACGGCGUGU--UAcGCCCga-----------AGC-GUGGG- -5'
23888 5' -57.6 NC_005262.1 + 5819 0.67 0.58172
Target:  5'- -uCCGUAggaGAUGCGGGCgcgccaauuucaagCGCGCUCg -3'
miRNA:   3'- acGGCGUg--UUACGCCCGaa------------GCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 6469 0.72 0.280516
Target:  5'- cGCCgGCAuCGAcGCGGGCccagaagUUCGCaACCCg -3'
miRNA:   3'- aCGG-CGU-GUUaCGCCCG-------AAGCG-UGGG- -5'
23888 5' -57.6 NC_005262.1 + 8204 0.66 0.611784
Target:  5'- cGCCGCAgCGAUgauccgcGCGGGCcaugaGCugUCg -3'
miRNA:   3'- aCGGCGU-GUUA-------CGCCCGaag--CGugGG- -5'
23888 5' -57.6 NC_005262.1 + 8399 0.67 0.559369
Target:  5'- aGCUGCuCGAUGCGGcGCUcgaucugcUUGCGCg- -3'
miRNA:   3'- aCGGCGuGUUACGCC-CGA--------AGCGUGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.