miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23888 5' -57.6 NC_005262.1 + 4582 0.69 0.41934
Target:  5'- gGCgGCGCugcuCGGGCgugaGCGCCCg -3'
miRNA:   3'- aCGgCGUGuuacGCCCGaag-CGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 16881 0.71 0.333308
Target:  5'- gGCCGCGCGc--CGGGC--CGCACCa -3'
miRNA:   3'- aCGGCGUGUuacGCCCGaaGCGUGGg -5'
23888 5' -57.6 NC_005262.1 + 19798 0.7 0.366114
Target:  5'- cGUCGCACAu--CGGGCggUCGCAagucuuCCCu -3'
miRNA:   3'- aCGGCGUGUuacGCCCGa-AGCGU------GGG- -5'
23888 5' -57.6 NC_005262.1 + 54902 0.7 0.366114
Target:  5'- cGCCGCGcCAGUuCGacGGC-UCGCACCUg -3'
miRNA:   3'- aCGGCGU-GUUAcGC--CCGaAGCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 8896 0.7 0.369514
Target:  5'- -aCCGCACGacgguccgcucuuggGUGCGcGGCgaaaaGCGCCCg -3'
miRNA:   3'- acGGCGUGU---------------UACGC-CCGaag--CGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 13369 0.7 0.374656
Target:  5'- cGCCaGCACGGaauccUGCgccuGGGCgcgCGCAUCCa -3'
miRNA:   3'- aCGG-CGUGUU-----ACG----CCCGaa-GCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 35848 0.7 0.380715
Target:  5'- cGCCGCGaccgcccagauguuuGUGCGcGGCgacgcgCGCACCUa -3'
miRNA:   3'- aCGGCGUgu-------------UACGC-CCGaa----GCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 5079 0.7 0.383331
Target:  5'- gGCgGCGC-GUGCGaccggcucGGCggugCGCGCCCg -3'
miRNA:   3'- aCGgCGUGuUACGC--------CCGaa--GCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 4936 0.69 0.413808
Target:  5'- -cCCGCACGuguUGCGGGCccucaucgaccaggaUUCGCAuaaUCCg -3'
miRNA:   3'- acGGCGUGUu--ACGCCCG---------------AAGCGU---GGG- -5'
23888 5' -57.6 NC_005262.1 + 12656 0.71 0.333308
Target:  5'- aGCgCGCGCGGcGCGcGGCgaacccUGCGCCCg -3'
miRNA:   3'- aCG-GCGUGUUaCGC-CCGaa----GCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 2760 0.71 0.317731
Target:  5'- cGCUucaGCACGGcgGCGGGUgcCGCAUCCu -3'
miRNA:   3'- aCGG---CGUGUUa-CGCCCGaaGCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 15308 0.72 0.310151
Target:  5'- cGCCGCGCAuggGCGGGCggccgUCGaGCa- -3'
miRNA:   3'- aCGGCGUGUua-CGCCCGa----AGCgUGgg -5'
23888 5' -57.6 NC_005262.1 + 49743 0.75 0.191584
Target:  5'- aGCCGCACcgacgccgGCGGcGCc-CGCGCCCg -3'
miRNA:   3'- aCGGCGUGuua-----CGCC-CGaaGCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 1137 0.75 0.196684
Target:  5'- gGCCGC----UGCGGGCUUCgauGCugCCg -3'
miRNA:   3'- aCGGCGuguuACGCCCGAAG---CGugGG- -5'
23888 5' -57.6 NC_005262.1 + 23751 0.73 0.260943
Target:  5'- cUGCC-CGCAgcGUGCGGGCUUUuucaCACCUg -3'
miRNA:   3'- -ACGGcGUGU--UACGCCCGAAGc---GUGGG- -5'
23888 5' -57.6 NC_005262.1 + 51209 0.72 0.27432
Target:  5'- aGCCGCGCGG-GCGauGCUgaUCGCACCg -3'
miRNA:   3'- aCGGCGUGUUaCGCc-CGA--AGCGUGGg -5'
23888 5' -57.6 NC_005262.1 + 6469 0.72 0.280516
Target:  5'- cGCCgGCAuCGAcGCGGGCccagaagUUCGCaACCCg -3'
miRNA:   3'- aCGG-CGU-GUUaCGCCCG-------AAGCG-UGGG- -5'
23888 5' -57.6 NC_005262.1 + 62030 0.72 0.29831
Target:  5'- cGCCGCGCGcgauccuccuccucgAUGCGGcGCaUCGCcUCCu -3'
miRNA:   3'- aCGGCGUGU---------------UACGCC-CGaAGCGuGGG- -5'
23888 5' -57.6 NC_005262.1 + 36120 0.72 0.302709
Target:  5'- cGCUGCGCGAUacgGCGaGGCga-GCACCg -3'
miRNA:   3'- aCGGCGUGUUA---CGC-CCGaagCGUGGg -5'
23888 5' -57.6 NC_005262.1 + 21255 0.72 0.310151
Target:  5'- gGCgGCGaucCGA-GCGGGCUUCaGCGCCa -3'
miRNA:   3'- aCGgCGU---GUUaCGCCCGAAG-CGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.