miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23888 5' -57.6 NC_005262.1 + 54354 1.12 0.000389
Target:  5'- gUGCCGCACAAUGCGGGCUUCGCACCCg -3'
miRNA:   3'- -ACGGCGUGUUACGCCCGAAGCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 50322 0.84 0.042711
Target:  5'- aGUagCGCGCGAcgcgcGCGGGCUUCGCGCCCu -3'
miRNA:   3'- aCG--GCGUGUUa----CGCCCGAAGCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 33680 0.79 0.094454
Target:  5'- aGCgGCACGAUcGUGGGCUUCGCGgCg -3'
miRNA:   3'- aCGgCGUGUUA-CGCCCGAAGCGUgGg -5'
23888 5' -57.6 NC_005262.1 + 30467 0.79 0.099865
Target:  5'- gUGCCGCGCAGcgacgcaguUGCGuccgacucgacGGCUUCGgCGCCCg -3'
miRNA:   3'- -ACGGCGUGUU---------ACGC-----------CCGAAGC-GUGGG- -5'
23888 5' -57.6 NC_005262.1 + 51684 0.78 0.121189
Target:  5'- cUGCucgCGCGCAcgGCGGcGCUgaUUGCGCCCg -3'
miRNA:   3'- -ACG---GCGUGUuaCGCC-CGA--AGCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 46891 0.76 0.167791
Target:  5'- gUGCgGUGCGGUGCGGGCggUGCgguguggugcgGCCCg -3'
miRNA:   3'- -ACGgCGUGUUACGCCCGaaGCG-----------UGGG- -5'
23888 5' -57.6 NC_005262.1 + 34136 0.75 0.176973
Target:  5'- gGCUGCGCGGgcGCGGGCggcaugccgcUCGCugCCg -3'
miRNA:   3'- aCGGCGUGUUa-CGCCCGa---------AGCGugGG- -5'
23888 5' -57.6 NC_005262.1 + 3373 0.75 0.176973
Target:  5'- aUGCCGCACGAUGCuauGCgcccCGUGCCCg -3'
miRNA:   3'- -ACGGCGUGUUACGcc-CGaa--GCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 45633 0.75 0.176973
Target:  5'- cGCuCGCGCGAUcagGCGGGCacgCGCuCCCg -3'
miRNA:   3'- aCG-GCGUGUUA---CGCCCGaa-GCGuGGG- -5'
23888 5' -57.6 NC_005262.1 + 49743 0.75 0.191584
Target:  5'- aGCCGCACcgacgccgGCGGcGCc-CGCGCCCg -3'
miRNA:   3'- aCGGCGUGuua-----CGCC-CGaaGCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 1137 0.75 0.196684
Target:  5'- gGCCGC----UGCGGGCUUCgauGCugCCg -3'
miRNA:   3'- aCGGCGuguuACGCCCGAAG---CGugGG- -5'
23888 5' -57.6 NC_005262.1 + 19177 0.74 0.218285
Target:  5'- aUGCCuuGCGC---GCGGGCUucUCGCGCUCg -3'
miRNA:   3'- -ACGG--CGUGuuaCGCCCGA--AGCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 57562 0.74 0.223993
Target:  5'- --gUGCGCGcgGCGGGCUUCaGCAUCUc -3'
miRNA:   3'- acgGCGUGUuaCGCCCGAAG-CGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 29777 0.73 0.235789
Target:  5'- cGgCGCACGAUGCGGcccggcgucacGCcgucCGCGCCCa -3'
miRNA:   3'- aCgGCGUGUUACGCC-----------CGaa--GCGUGGG- -5'
23888 5' -57.6 NC_005262.1 + 34359 0.73 0.241881
Target:  5'- cUGCCGCAgCcuUGCGGGCcUUCGcCugCUg -3'
miRNA:   3'- -ACGGCGU-GuuACGCCCG-AAGC-GugGG- -5'
23888 5' -57.6 NC_005262.1 + 15401 0.73 0.248103
Target:  5'- cGCCGCGCuucaGCGaGGCgcggUCGUaACCCg -3'
miRNA:   3'- aCGGCGUGuua-CGC-CCGa---AGCG-UGGG- -5'
23888 5' -57.6 NC_005262.1 + 16036 0.73 0.254456
Target:  5'- aGcCCGCGCGAUGcCGGGUUcgcCGCGgCCg -3'
miRNA:   3'- aC-GGCGUGUUAC-GCCCGAa--GCGUgGG- -5'
23888 5' -57.6 NC_005262.1 + 23751 0.73 0.260943
Target:  5'- cUGCC-CGCAgcGUGCGGGCUUUuucaCACCUg -3'
miRNA:   3'- -ACGGcGUGU--UACGCCCGAAGc---GUGGG- -5'
23888 5' -57.6 NC_005262.1 + 30945 0.73 0.267564
Target:  5'- cGCCGCAC-GUGCGGGCcgaaaccUUGuCGCCg -3'
miRNA:   3'- aCGGCGUGuUACGCCCGa------AGC-GUGGg -5'
23888 5' -57.6 NC_005262.1 + 51209 0.72 0.27432
Target:  5'- aGCCGCGCGG-GCGauGCUgaUCGCACCg -3'
miRNA:   3'- aCGGCGUGUUaCGCc-CGA--AGCGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.