miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23912 3' -54 NC_005262.1 + 46996 0.66 0.826736
Target:  5'- gGCAUGGCGCGcgacGCAG-AUGGGCGa -3'
miRNA:   3'- -CGUGCCGUGCaacuUGUCcUGUCCGU- -5'
23912 3' -54 NC_005262.1 + 44154 0.66 0.826736
Target:  5'- aCGCGcGCGCGaucGGGCAGGAgCGcGGCGg -3'
miRNA:   3'- cGUGC-CGUGCaa-CUUGUCCU-GU-CCGU- -5'
23912 3' -54 NC_005262.1 + 15624 0.66 0.826736
Target:  5'- cGCAUcgaGGCGCGgcUGAACGcGuCGGGCAu -3'
miRNA:   3'- -CGUG---CCGUGCa-ACUUGUcCuGUCCGU- -5'
23912 3' -54 NC_005262.1 + 30950 0.66 0.824911
Target:  5'- -gACGGCGCGcuacuucccGCAGG-CGGGCGa -3'
miRNA:   3'- cgUGCCGUGCaacu-----UGUCCuGUCCGU- -5'
23912 3' -54 NC_005262.1 + 32565 0.66 0.817529
Target:  5'- cUugGGCGCGUcGAuc--GACAGGCGc -3'
miRNA:   3'- cGugCCGUGCAaCUugucCUGUCCGU- -5'
23912 3' -54 NC_005262.1 + 61143 0.66 0.817529
Target:  5'- cGCGCuGGCGCagcaGAucGCGGcGGCGGGCGa -3'
miRNA:   3'- -CGUG-CCGUGcaa-CU--UGUC-CUGUCCGU- -5'
23912 3' -54 NC_005262.1 + 49145 0.66 0.817529
Target:  5'- aGguCGGCACGgUGGGCGu-GCAGGCc -3'
miRNA:   3'- -CguGCCGUGCaACUUGUccUGUCCGu -5'
23912 3' -54 NC_005262.1 + 13509 0.66 0.817529
Target:  5'- cGCGCGGC-CGUc--ACGGGcucggccggcGCGGGCGc -3'
miRNA:   3'- -CGUGCCGuGCAacuUGUCC----------UGUCCGU- -5'
23912 3' -54 NC_005262.1 + 3306 0.66 0.815664
Target:  5'- cGCGCGGCccgGCGUcucgcccUGAucgcGCAGcgucauguagagcGACAGGCGc -3'
miRNA:   3'- -CGUGCCG---UGCA-------ACU----UGUC-------------CUGUCCGU- -5'
23912 3' -54 NC_005262.1 + 60573 0.66 0.813791
Target:  5'- cGCuCGGCGCGgucuaccuguuccUGAacccggcgauACAGGGCAcGGCGa -3'
miRNA:   3'- -CGuGCCGUGCa------------ACU----------UGUCCUGU-CCGU- -5'
23912 3' -54 NC_005262.1 + 53452 0.66 0.808127
Target:  5'- aGCGCGGCGcCGgcGucgAGGACAacGGCGu -3'
miRNA:   3'- -CGUGCCGU-GCaaCuugUCCUGU--CCGU- -5'
23912 3' -54 NC_005262.1 + 15162 0.66 0.808127
Target:  5'- gGCGCGG-AUGUUGGACGGcacGCAGcGCu -3'
miRNA:   3'- -CGUGCCgUGCAACUUGUCc--UGUC-CGu -5'
23912 3' -54 NC_005262.1 + 48466 0.66 0.788776
Target:  5'- cGCGCGGaucgcgagcCGCG-UGGGCAcGGGCGGcGCGa -3'
miRNA:   3'- -CGUGCC---------GUGCaACUUGU-CCUGUC-CGU- -5'
23912 3' -54 NC_005262.1 + 26874 0.66 0.788776
Target:  5'- cGCACGGuCACGaucGAguGGGCcGGCGc -3'
miRNA:   3'- -CGUGCC-GUGCaacUUguCCUGuCCGU- -5'
23912 3' -54 NC_005262.1 + 17819 0.67 0.77885
Target:  5'- aCGCGGCuguCGUcccaacccucGAGCGGGAaCAGGUAc -3'
miRNA:   3'- cGUGCCGu--GCAa---------CUUGUCCU-GUCCGU- -5'
23912 3' -54 NC_005262.1 + 26519 0.67 0.77885
Target:  5'- cGC-CGcGCACGUUGAACGuGGCucGGCc -3'
miRNA:   3'- -CGuGC-CGUGCAACUUGUcCUGu-CCGu -5'
23912 3' -54 NC_005262.1 + 29455 0.67 0.77885
Target:  5'- uCACGGCGuCGaUGAacgccugauaguGCAGGGC-GGCGa -3'
miRNA:   3'- cGUGCCGU-GCaACU------------UGUCCUGuCCGU- -5'
23912 3' -54 NC_005262.1 + 58685 0.67 0.768771
Target:  5'- cGCAUGGCAgGcaucgUGAACcGGGCGcGCAc -3'
miRNA:   3'- -CGUGCCGUgCa----ACUUGuCCUGUcCGU- -5'
23912 3' -54 NC_005262.1 + 38441 0.67 0.768771
Target:  5'- cGCAcCGGCuguugGCGUUGAACAGcGCGuGGUc -3'
miRNA:   3'- -CGU-GCCG-----UGCAACUUGUCcUGU-CCGu -5'
23912 3' -54 NC_005262.1 + 21822 0.67 0.748201
Target:  5'- uGCGCGGCG-GUgu--CAGGcaACAGGCGc -3'
miRNA:   3'- -CGUGCCGUgCAacuuGUCC--UGUCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.