miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23912 5' -62.2 NC_005262.1 + 63587 0.67 0.364652
Target:  5'- --gGCauGCUCgUGC--GCGCGCUGCGGa -3'
miRNA:   3'- cuaCG--CGGGgACGaaCGCGCGGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 62720 0.67 0.332913
Target:  5'- --cGCGCacgcaCCCUGaucgGCGCGCUgGCGGu -3'
miRNA:   3'- cuaCGCG-----GGGACgaa-CGCGCGG-CGCC- -5'
23912 5' -62.2 NC_005262.1 + 61767 0.68 0.296158
Target:  5'- --cGCGCCCCgucgaGCagcacgaaGCaGCGCCGUGGc -3'
miRNA:   3'- cuaCGCGGGGa----CGaa------CG-CGCGGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 61724 0.69 0.262636
Target:  5'- --gGCGCgCUCUGCUUacuucGcCGCGUCGUGGa -3'
miRNA:   3'- cuaCGCG-GGGACGAA-----C-GCGCGGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 60981 0.67 0.325302
Target:  5'- cGAUGCGUUCCUGUcgGcCGUGCCGa-- -3'
miRNA:   3'- -CUACGCGGGGACGaaC-GCGCGGCgcc -5'
23912 5' -62.2 NC_005262.1 + 58446 0.66 0.398422
Target:  5'- --gGaCGCCCCgGCagGCGUGC-GCGGc -3'
miRNA:   3'- cuaC-GCGGGGaCGaaCGCGCGgCGCC- -5'
23912 5' -62.2 NC_005262.1 + 58200 0.66 0.372907
Target:  5'- --cGCGUCgCCUGCggagaGCgGCGCCGCc- -3'
miRNA:   3'- cuaCGCGG-GGACGaa---CG-CGCGGCGcc -5'
23912 5' -62.2 NC_005262.1 + 56528 0.68 0.296158
Target:  5'- --gGCGacaCCCCUGCUgGUGUGCCGUu- -3'
miRNA:   3'- cuaCGC---GGGGACGAaCGCGCGGCGcc -5'
23912 5' -62.2 NC_005262.1 + 56497 0.66 0.394956
Target:  5'- --aGCGCCUCUacaGCgaggagcaucugGaCGCGCCGUGGu -3'
miRNA:   3'- cuaCGCGGGGA---CGaa----------C-GCGCGGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 55857 0.7 0.204904
Target:  5'- --cGUGCCCgaGCUgaUGCGCCGCGu -3'
miRNA:   3'- cuaCGCGGGgaCGAacGCGCGGCGCc -5'
23912 5' -62.2 NC_005262.1 + 53464 0.72 0.146541
Target:  5'- aGAUGCGCCCUUGCgcaggUGCuCGUCGaCGa -3'
miRNA:   3'- -CUACGCGGGGACGa----ACGcGCGGC-GCc -5'
23912 5' -62.2 NC_005262.1 + 53218 0.67 0.332913
Target:  5'- --cGCGCCgCgCUGCUccGCGguaCGCUGCGGc -3'
miRNA:   3'- cuaCGCGG-G-GACGAa-CGC---GCGGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 52835 0.7 0.224867
Target:  5'- --cGCGCCgaacagcgcgaaugCCUGC-UGCGCGUagCGCGGc -3'
miRNA:   3'- cuaCGCGG--------------GGACGaACGCGCG--GCGCC- -5'
23912 5' -62.2 NC_005262.1 + 52376 0.66 0.381287
Target:  5'- --cGCGCaCCUucgGCggcccgGCGCGgCGCGGc -3'
miRNA:   3'- cuaCGCG-GGGa--CGaa----CGCGCgGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 52319 0.69 0.250116
Target:  5'- --cGCGgCCCaugUGCUcGCGCGCgagCGCGGu -3'
miRNA:   3'- cuaCGCgGGG---ACGAaCGCGCG---GCGCC- -5'
23912 5' -62.2 NC_005262.1 + 51673 0.67 0.364652
Target:  5'- --aGCGCggcgaUCUGCUcGCGCGCacgGCGGc -3'
miRNA:   3'- cuaCGCGg----GGACGAaCGCGCGg--CGCC- -5'
23912 5' -62.2 NC_005262.1 + 50979 0.7 0.209614
Target:  5'- --cGCGCUCCUucuucacgcgccgGC-UGCGCGCCGCc- -3'
miRNA:   3'- cuaCGCGGGGA-------------CGaACGCGCGGCGcc -5'
23912 5' -62.2 NC_005262.1 + 50791 0.7 0.234581
Target:  5'- --cGCGCUCCUGCgcgUacacccacgucacgcGCGgGUCGCGGu -3'
miRNA:   3'- cuaCGCGGGGACGa--A---------------CGCgCGGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 50650 0.67 0.364652
Target:  5'- -uUGUGCCgC-GCagcGCGCGCgGCGGa -3'
miRNA:   3'- cuACGCGGgGaCGaa-CGCGCGgCGCC- -5'
23912 5' -62.2 NC_005262.1 + 48190 0.75 0.095923
Target:  5'- cGAUGCGCUCCUGCcgcacgcgcuccucGCGCGCgCGCGc -3'
miRNA:   3'- -CUACGCGGGGACGaa------------CGCGCG-GCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.