miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23951 5' -61.1 NC_005262.1 + 35835 0.65 0.503476
Target:  5'- gGAGcggCGUCGGCgccgcgaccgcccaGAuguuuguGCGCGGCGaCGCGc -3'
miRNA:   3'- gCUCa--GCAGUCG--------------CU-------CGCGCCGC-GCGC- -5'
23951 5' -61.1 NC_005262.1 + 14924 0.66 0.497598
Target:  5'- aCGAcGUCGgaCAGUu-GCGCGGgGUGCGu -3'
miRNA:   3'- -GCU-CAGCa-GUCGcuCGCGCCgCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 49211 0.66 0.497598
Target:  5'- gGuGUUGU---UGGGUGCGGUGCGCGu -3'
miRNA:   3'- gCuCAGCAgucGCUCGCGCCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 51179 0.66 0.487872
Target:  5'- cCGAGcaaugCGGCGAGgGagGGCGCGCu -3'
miRNA:   3'- -GCUCagca-GUCGCUCgCg-CCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 59938 0.66 0.487872
Target:  5'- gGAcuGUCGgccuaccaUCAGCGGcacgucacGCGCGGgGCGCu -3'
miRNA:   3'- gCU--CAGC--------AGUCGCU--------CGCGCCgCGCGc -5'
23951 5' -61.1 NC_005262.1 + 48476 0.66 0.487872
Target:  5'- gCGAGccgCGUgGGCacGgGCGGCGCGaCGg -3'
miRNA:   3'- -GCUCa--GCAgUCGcuCgCGCCGCGC-GC- -5'
23951 5' -61.1 NC_005262.1 + 13457 0.66 0.478237
Target:  5'- aGGGUCG-CAa-GGGCGCGaagcccGCGCGCGu -3'
miRNA:   3'- gCUCAGCaGUcgCUCGCGC------CGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 26018 0.66 0.478237
Target:  5'- cCGAGggcaCGUacuacgcccagCAGCucGcCGCGGCGCGCa -3'
miRNA:   3'- -GCUCa---GCA-----------GUCGcuC-GCGCCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 17474 0.66 0.478237
Target:  5'- cCGAGUUccaggacgaAGCGcGCGCcGCGCGCGa -3'
miRNA:   3'- -GCUCAGcag------UCGCuCGCGcCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 17585 0.66 0.478237
Target:  5'- cCGAGgagaaGcUGGCG-GCGCaGCGCGCGg -3'
miRNA:   3'- -GCUCag---CaGUCGCuCGCGcCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 52328 0.66 0.468696
Target:  5'- uGuGcUCG-CGcGCGAGCGCGGUaggcacgauGCGCGg -3'
miRNA:   3'- gCuC-AGCaGU-CGCUCGCGCCG---------CGCGC- -5'
23951 5' -61.1 NC_005262.1 + 11078 0.66 0.459253
Target:  5'- ---uUCGUCAGC-AGCGCGGCcucguccgGCGuCGg -3'
miRNA:   3'- gcucAGCAGUCGcUCGCGCCG--------CGC-GC- -5'
23951 5' -61.1 NC_005262.1 + 22667 0.66 0.459253
Target:  5'- aCGuGUCGUC--CGAGCGCGccgugaCGCGCa -3'
miRNA:   3'- -GCuCAGCAGucGCUCGCGCc-----GCGCGc -5'
23951 5' -61.1 NC_005262.1 + 35624 0.66 0.459253
Target:  5'- -cAGUCGUcCGGCaacGGCacGCGGCGgGCGa -3'
miRNA:   3'- gcUCAGCA-GUCGc--UCG--CGCCGCgCGC- -5'
23951 5' -61.1 NC_005262.1 + 42172 0.66 0.458314
Target:  5'- cCGA-UCGUCuGUacgugauGGGCGaCGGCGCGCc -3'
miRNA:   3'- -GCUcAGCAGuCG-------CUCGC-GCCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 8541 0.66 0.453636
Target:  5'- cCGAGUgCGUgaugaugaccgcaucCGGauuguuGAGCGCGGCcuGCGCGa -3'
miRNA:   3'- -GCUCA-GCA---------------GUCg-----CUCGCGCCG--CGCGC- -5'
23951 5' -61.1 NC_005262.1 + 56728 0.66 0.450842
Target:  5'- cCGAGgCGUCGGCGuucgacauggccgccGCGCuGGCGUcggGCGa -3'
miRNA:   3'- -GCUCaGCAGUCGCu--------------CGCG-CCGCG---CGC- -5'
23951 5' -61.1 NC_005262.1 + 29658 0.66 0.449913
Target:  5'- gCGGGUagaCGUagaAGau-GCGCGGUGCGCGc -3'
miRNA:   3'- -GCUCA---GCAg--UCgcuCGCGCCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 6880 0.66 0.448985
Target:  5'- uCGAGcgcggccuugaucUCGcCGGCGAGCGUGuuguCGCGCu -3'
miRNA:   3'- -GCUC-------------AGCaGUCGCUCGCGCc---GCGCGc -5'
23951 5' -61.1 NC_005262.1 + 63063 0.67 0.440678
Target:  5'- cCGGcaCGUCAucGCGGGCgaguaugcgGCGGCGUGCa -3'
miRNA:   3'- -GCUcaGCAGU--CGCUCG---------CGCCGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.