miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23951 5' -61.1 NC_005262.1 + 63063 0.67 0.440678
Target:  5'- cCGGcaCGUCAucGCGGGCgaguaugcgGCGGCGUGCa -3'
miRNA:   3'- -GCUcaGCAGU--CGCUCG---------CGCCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 62774 0.67 0.431552
Target:  5'- uGGGUCGcCAGCGAGgGauuCGCGCc -3'
miRNA:   3'- gCUCAGCaGUCGCUCgCgccGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 61635 0.73 0.172894
Target:  5'- gGAGcUCGagGGCGAGgaggaagugcuguacCGCGGCGCGCu -3'
miRNA:   3'- gCUC-AGCagUCGCUC---------------GCGCCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 61157 0.69 0.316366
Target:  5'- aGA-UCGcggCGGCGGGCGagcugacgGGCGCGCGg -3'
miRNA:   3'- gCUcAGCa--GUCGCUCGCg-------CCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 59938 0.66 0.487872
Target:  5'- gGAcuGUCGgccuaccaUCAGCGGcacgucacGCGCGGgGCGCu -3'
miRNA:   3'- gCU--CAGC--------AGUCGCU--------CGCGCCgCGCGc -5'
23951 5' -61.1 NC_005262.1 + 58634 0.68 0.37922
Target:  5'- aGGcUCGgCAGuCGAGCGgccgGGCGCGCGa -3'
miRNA:   3'- gCUcAGCaGUC-GCUCGCg---CCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 57935 0.68 0.346775
Target:  5'- -cGGUCG-CGGCauucaacguggaGGGCGCGaGCGCGCu -3'
miRNA:   3'- gcUCAGCaGUCG------------CUCGCGC-CGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 57489 0.67 0.396187
Target:  5'- aCGAGaggCGgcCGGCGAGCGCaagaaGGCG-GCGa -3'
miRNA:   3'- -GCUCa--GCa-GUCGCUCGCG-----CCGCgCGC- -5'
23951 5' -61.1 NC_005262.1 + 57277 0.71 0.243266
Target:  5'- gCGAG-CGUgaCGGCGAG-GuCGGCGCGCu -3'
miRNA:   3'- -GCUCaGCA--GUCGCUCgC-GCCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 56728 0.66 0.450842
Target:  5'- cCGAGgCGUCGGCGuucgacauggccgccGCGCuGGCGUcggGCGa -3'
miRNA:   3'- -GCUCaGCAGUCGCu--------------CGCG-CCGCG---CGC- -5'
23951 5' -61.1 NC_005262.1 + 56332 0.67 0.413637
Target:  5'- uCGAaaagCGUCuGGuCGAGgGCGGCGUGCc -3'
miRNA:   3'- -GCUca--GCAG-UC-GCUCgCGCCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 52800 0.68 0.370097
Target:  5'- ---cUCGUCAgccguGCGAGCGCgaccggcguucccGGCGCGCc -3'
miRNA:   3'- gcucAGCAGU-----CGCUCGCG-------------CCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 52370 0.71 0.225371
Target:  5'- gCGuGUCGcgcaccuUCGGCGgcccGGCGCGGCGCGg- -3'
miRNA:   3'- -GCuCAGC-------AGUCGC----UCGCGCCGCGCgc -5'
23951 5' -61.1 NC_005262.1 + 52328 0.66 0.468696
Target:  5'- uGuGcUCG-CGcGCGAGCGCGGUaggcacgauGCGCGg -3'
miRNA:   3'- gCuC-AGCaGU-CGCUCGCGCCG---------CGCGC- -5'
23951 5' -61.1 NC_005262.1 + 52276 0.68 0.352307
Target:  5'- cCGAGUCGcauguUCAGgcacacgaugcagcCGAGCuCGGCGaCGCGg -3'
miRNA:   3'- -GCUCAGC-----AGUC--------------GCUCGcGCCGC-GCGC- -5'
23951 5' -61.1 NC_005262.1 + 52142 0.67 0.396187
Target:  5'- --uGUCGuUCuGgGAG-GCGGCGCGCa -3'
miRNA:   3'- gcuCAGC-AGuCgCUCgCGCCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 51179 0.66 0.487872
Target:  5'- cCGAGcaaugCGGCGAGgGagGGCGCGCu -3'
miRNA:   3'- -GCUCagca-GUCGCUCgCg-CCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 50924 0.67 0.396187
Target:  5'- aCGAG-CGUCAcCGuGCaCGGCaGCGCGa -3'
miRNA:   3'- -GCUCaGCAGUcGCuCGcGCCG-CGCGC- -5'
23951 5' -61.1 NC_005262.1 + 50646 0.67 0.404853
Target:  5'- gGAGUUGUgCcGCGcAGCGCGcGCG-GCGg -3'
miRNA:   3'- gCUCAGCA-GuCGC-UCGCGC-CGCgCGC- -5'
23951 5' -61.1 NC_005262.1 + 50574 0.68 0.37922
Target:  5'- aGAGgagCGUUGGCGGacGCGcCGGuUGCGCGc -3'
miRNA:   3'- gCUCa--GCAGUCGCU--CGC-GCC-GCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.