miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23953 3' -58.5 NC_005262.1 + 10271 0.66 0.550094
Target:  5'- gGCGAaauacucguuuaucUGgGcCGGCcCCUGCGGCGUc -3'
miRNA:   3'- aCGCUa-------------ACgCaGCCGuGGACGCCGUA- -5'
23953 3' -58.5 NC_005262.1 + 12832 0.66 0.545863
Target:  5'- gGCGAgaacucggccUGCGUCGGCuucaGCUcgGCGGCc- -3'
miRNA:   3'- aCGCUa---------ACGCAGCCG----UGGa-CGCCGua -5'
23953 3' -58.5 NC_005262.1 + 49222 0.66 0.545863
Target:  5'- gUGCGG-UGCGcgUGaGCGCC-GCGGCGa -3'
miRNA:   3'- -ACGCUaACGCa-GC-CGUGGaCGCCGUa -5'
23953 3' -58.5 NC_005262.1 + 17363 0.66 0.535332
Target:  5'- cGCGGgcgGCG-CGGCGggccCCUGCGGa-- -3'
miRNA:   3'- aCGCUaa-CGCaGCCGU----GGACGCCgua -5'
23953 3' -58.5 NC_005262.1 + 34132 0.66 0.524873
Target:  5'- gGCGGgcUGCG-CgGGCGCggGCGGCAUg -3'
miRNA:   3'- aCGCUa-ACGCaG-CCGUGgaCGCCGUA- -5'
23953 3' -58.5 NC_005262.1 + 30568 0.66 0.524873
Target:  5'- cGCGucgauGUUGaCGUCGGCAa-UGUGGCGc -3'
miRNA:   3'- aCGC-----UAAC-GCAGCCGUggACGCCGUa -5'
23953 3' -58.5 NC_005262.1 + 51279 0.66 0.524873
Target:  5'- gGCGAUcGCGUcgcgCGGCAUCUGaaGCGc -3'
miRNA:   3'- aCGCUAaCGCA----GCCGUGGACgcCGUa -5'
23953 3' -58.5 NC_005262.1 + 22626 0.66 0.524873
Target:  5'- cGCGAUcGCGgCGGUgcccuCCUGCGcGCGc -3'
miRNA:   3'- aCGCUAaCGCaGCCGu----GGACGC-CGUa -5'
23953 3' -58.5 NC_005262.1 + 19614 0.66 0.514494
Target:  5'- gUGCGAgugGCgGUCGGCGuCCaGCccGGCAa -3'
miRNA:   3'- -ACGCUaa-CG-CAGCCGU-GGaCG--CCGUa -5'
23953 3' -58.5 NC_005262.1 + 24334 0.66 0.51346
Target:  5'- cGCGAUcgacaugcggcucUGCGUCGGCgcGCCUGauaccuGCAa -3'
miRNA:   3'- aCGCUA-------------ACGCAGCCG--UGGACgc----CGUa -5'
23953 3' -58.5 NC_005262.1 + 47228 0.67 0.504198
Target:  5'- cGCGccUGC-UCGGCAUCcGCGGCc- -3'
miRNA:   3'- aCGCuaACGcAGCCGUGGaCGCCGua -5'
23953 3' -58.5 NC_005262.1 + 17186 0.67 0.504198
Target:  5'- cGCGucggGCGggaucugUGGCGUCUGCGGCGa -3'
miRNA:   3'- aCGCuaa-CGCa------GCCGUGGACGCCGUa -5'
23953 3' -58.5 NC_005262.1 + 58821 0.67 0.493993
Target:  5'- cGUGAagGCa-UGGCugCUGCGGCGc -3'
miRNA:   3'- aCGCUaaCGcaGCCGugGACGCCGUa -5'
23953 3' -58.5 NC_005262.1 + 24743 0.67 0.487915
Target:  5'- cGCGAUcgGCGUgCGGCcgaaguggauucagcACC-GCGGCGa -3'
miRNA:   3'- aCGCUAa-CGCA-GCCG---------------UGGaCGCCGUa -5'
23953 3' -58.5 NC_005262.1 + 27785 0.67 0.483883
Target:  5'- -aCGAUgaUGCGaCGGCACUcgcGCGGCAc -3'
miRNA:   3'- acGCUA--ACGCaGCCGUGGa--CGCCGUa -5'
23953 3' -58.5 NC_005262.1 + 9300 0.67 0.463969
Target:  5'- gUGCGAcgacaGCGU-GGCGCCUggaacgaaaaugGCGGCAg -3'
miRNA:   3'- -ACGCUaa---CGCAgCCGUGGA------------CGCCGUa -5'
23953 3' -58.5 NC_005262.1 + 17129 0.67 0.454173
Target:  5'- gGCGg--GCGUCGGUGCCgGCGcCAUg -3'
miRNA:   3'- aCGCuaaCGCAGCCGUGGaCGCcGUA- -5'
23953 3' -58.5 NC_005262.1 + 45760 0.67 0.4532
Target:  5'- cGCGAacGCGacgccgaUCGGCAUC-GCGGCGa -3'
miRNA:   3'- aCGCUaaCGC-------AGCCGUGGaCGCCGUa -5'
23953 3' -58.5 NC_005262.1 + 10584 0.68 0.444491
Target:  5'- cGCGGagcaGCG-CGGCGCgaGCGGCu- -3'
miRNA:   3'- aCGCUaa--CGCaGCCGUGgaCGCCGua -5'
23953 3' -58.5 NC_005262.1 + 17544 0.68 0.434926
Target:  5'- cGCGGUcGCGcgcgaggCGGCAgCCgcgGCGGCGc -3'
miRNA:   3'- aCGCUAaCGCa------GCCGU-GGa--CGCCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.