miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23953 5' -60 NC_005262.1 + 60833 0.66 0.511542
Target:  5'- cGAUGCCGGGCagcgugaGUGCCCGcC-CCa-- -3'
miRNA:   3'- cCUACGGCUCG-------CACGGGCaGaGGccg -5'
23953 5' -60 NC_005262.1 + 59696 0.66 0.552911
Target:  5'- cGGcGUGCCGccacGCGggcGCUaCGUCgCCGGCa -3'
miRNA:   3'- -CC-UACGGCu---CGCa--CGG-GCAGaGGCCG- -5'
23953 5' -60 NC_005262.1 + 59112 0.72 0.227743
Target:  5'- uGGAUGCC--GCG-GCCCGa-UCCGGCc -3'
miRNA:   3'- -CCUACGGcuCGCaCGGGCagAGGCCG- -5'
23953 5' -60 NC_005262.1 + 55634 0.66 0.542718
Target:  5'- aGAaGCCGGGCcgcgcgcucGUGgCCGcgUCCGGCa -3'
miRNA:   3'- cCUaCGGCUCG---------CACgGGCagAGGCCG- -5'
23953 5' -60 NC_005262.1 + 52386 0.68 0.435878
Target:  5'- cGGcgGCCcGGCGcgGCgCGgCUUCGGCg -3'
miRNA:   3'- -CCuaCGGcUCGCa-CGgGCaGAGGCCG- -5'
23953 5' -60 NC_005262.1 + 52207 0.66 0.532587
Target:  5'- uGGAagucGCuCGAGCGcUGgCCGcCgCCGGCa -3'
miRNA:   3'- -CCUa---CG-GCUCGC-ACgGGCaGaGGCCG- -5'
23953 5' -60 NC_005262.1 + 49751 0.7 0.319308
Target:  5'- cGAcGCCG-GCGgcgcccgcGCCCGaggCUCCGGCc -3'
miRNA:   3'- cCUaCGGCuCGCa-------CGGGCa--GAGGCCG- -5'
23953 5' -60 NC_005262.1 + 49176 0.66 0.522525
Target:  5'- ---gGCCGcAGCG-GCgCGcacggcgaugaUCUCCGGCa -3'
miRNA:   3'- ccuaCGGC-UCGCaCGgGC-----------AGAGGCCG- -5'
23953 5' -60 NC_005262.1 + 48091 0.66 0.522525
Target:  5'- ---cGUCGAGCGcauagcgcUGCUCGUCcgUCuCGGCg -3'
miRNA:   3'- ccuaCGGCUCGC--------ACGGGCAG--AG-GCCG- -5'
23953 5' -60 NC_005262.1 + 47852 0.69 0.372038
Target:  5'- uGAaGCCGAGCGUGUgcagcacuuccuccUCGcUCUgCGGCg -3'
miRNA:   3'- cCUaCGGCUCGCACG--------------GGC-AGAgGCCG- -5'
23953 5' -60 NC_005262.1 + 46849 0.68 0.435878
Target:  5'- ---cGCCGAGCGUGCUgGacuUCUUCcGCa -3'
miRNA:   3'- ccuaCGGCUCGCACGGgC---AGAGGcCG- -5'
23953 5' -60 NC_005262.1 + 45224 0.66 0.522525
Target:  5'- ---cGCCGGGCucgGCCUGaacgCCGGCa -3'
miRNA:   3'- ccuaCGGCUCGca-CGGGCaga-GGCCG- -5'
23953 5' -60 NC_005262.1 + 43233 0.68 0.42676
Target:  5'- ---cGCCGGGC-UGCUCGUCU-UGGCc -3'
miRNA:   3'- ccuaCGGCUCGcACGGGCAGAgGCCG- -5'
23953 5' -60 NC_005262.1 + 42247 0.7 0.32681
Target:  5'- cGAUGCCGAGCGccgcGCUCa-CUgCGGCg -3'
miRNA:   3'- cCUACGGCUCGCa---CGGGcaGAgGCCG- -5'
23953 5' -60 NC_005262.1 + 42092 0.68 0.435878
Target:  5'- --uUGCCGAucuGCGUGCCCG-CguacagcagCgCGGCg -3'
miRNA:   3'- ccuACGGCU---CGCACGGGCaGa--------G-GCCG- -5'
23953 5' -60 NC_005262.1 + 41593 0.69 0.36626
Target:  5'- --uUGUCGAGCGcgaGCCCGgcgUUCuCGGCu -3'
miRNA:   3'- ccuACGGCUCGCa--CGGGCa--GAG-GCCG- -5'
23953 5' -60 NC_005262.1 + 35685 0.67 0.454443
Target:  5'- ---cGUCGAGCGgGCacggaagcauCCG-CUCCGGCg -3'
miRNA:   3'- ccuaCGGCUCGCaCG----------GGCaGAGGCCG- -5'
23953 5' -60 NC_005262.1 + 34738 0.69 0.391457
Target:  5'- ---gGUCGAGCcgaacacgGUGCgCGUCgugCCGGCg -3'
miRNA:   3'- ccuaCGGCUCG--------CACGgGCAGa--GGCCG- -5'
23953 5' -60 NC_005262.1 + 34244 0.69 0.391457
Target:  5'- uGGgcGCCGAGUacaugaacGUGCUCGUCUCUa-- -3'
miRNA:   3'- -CCuaCGGCUCG--------CACGGGCAGAGGccg -5'
23953 5' -60 NC_005262.1 + 34006 0.71 0.297581
Target:  5'- aGGuUGCUGGG-GUGCCgCGcCgUCCGGCa -3'
miRNA:   3'- -CCuACGGCUCgCACGG-GCaG-AGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.