miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23953 5' -60 NC_005262.1 + 10400 0.66 0.542718
Target:  5'- -cGUGCCG-GCGuUGUCCuugaacgcgGUCUgCGGCa -3'
miRNA:   3'- ccUACGGCuCGC-ACGGG---------CAGAgGCCG- -5'
23953 5' -60 NC_005262.1 + 18076 0.69 0.350094
Target:  5'- gGGAUGCCGAaC-UGCUCGaUCacggCCGGCu -3'
miRNA:   3'- -CCUACGGCUcGcACGGGC-AGa---GGCCG- -5'
23953 5' -60 NC_005262.1 + 33702 0.7 0.311935
Target:  5'- cGGcgGCCG-GCGUgucgucGCCCuUCUugCCGGCg -3'
miRNA:   3'- -CCuaCGGCuCGCA------CGGGcAGA--GGCCG- -5'
23953 5' -60 NC_005262.1 + 25341 0.76 0.122523
Target:  5'- aGGAUacgGCgaCGAGCGUG-CCGUCgUCCGGCg -3'
miRNA:   3'- -CCUA---CG--GCUCGCACgGGCAG-AGGCCG- -5'
23953 5' -60 NC_005262.1 + 60833 0.66 0.511542
Target:  5'- cGAUGCCGGGCagcgugaGUGCCCGcC-CCa-- -3'
miRNA:   3'- cCUACGGCUCG-------CACGGGCaGaGGccg -5'
23953 5' -60 NC_005262.1 + 33885 0.67 0.487926
Target:  5'- ---cGCCGAGCGUGgucgcaucgcccgaaCCGUCaucuuccugaagcgCCGGCg -3'
miRNA:   3'- ccuaCGGCUCGCACg--------------GGCAGa-------------GGCCG- -5'
23953 5' -60 NC_005262.1 + 28637 0.67 0.463885
Target:  5'- --uUGCCGccAGCGUcGCCCGga-UCGGCg -3'
miRNA:   3'- ccuACGGC--UCGCA-CGGGCagaGGCCG- -5'
23953 5' -60 NC_005262.1 + 52386 0.68 0.435878
Target:  5'- cGGcgGCCcGGCGcgGCgCGgCUUCGGCg -3'
miRNA:   3'- -CCuaCGGcUCGCa-CGgGCaGAGGCCG- -5'
23953 5' -60 NC_005262.1 + 12793 0.66 0.552911
Target:  5'- cGGUcGCCGgucgcuuccuuGGCcUGCUCGaccuUCUCCGGCg -3'
miRNA:   3'- cCUA-CGGC-----------UCGcACGGGC----AGAGGCCG- -5'
23953 5' -60 NC_005262.1 + 41593 0.69 0.36626
Target:  5'- --uUGUCGAGCGcgaGCCCGgcgUUCuCGGCu -3'
miRNA:   3'- ccuACGGCUCGCa--CGGGCa--GAG-GCCG- -5'
23953 5' -60 NC_005262.1 + 12061 0.68 0.408871
Target:  5'- --uUGCCGAGC-UGgUCGaucagCUCCGGCu -3'
miRNA:   3'- ccuACGGCUCGcACgGGCa----GAGGCCG- -5'
23953 5' -60 NC_005262.1 + 43233 0.68 0.42676
Target:  5'- ---cGCCGGGC-UGCUCGUCU-UGGCc -3'
miRNA:   3'- ccuaCGGCUCGcACGGGCAGAgGCCG- -5'
23953 5' -60 NC_005262.1 + 52207 0.66 0.532587
Target:  5'- uGGAagucGCuCGAGCGcUGgCCGcCgCCGGCa -3'
miRNA:   3'- -CCUa---CG-GCUCGC-ACgGGCaGaGGCCG- -5'
23953 5' -60 NC_005262.1 + 33165 0.68 0.400104
Target:  5'- cGGGcaccuUGCCGAGCGUcggcggcgGCUCGaUCUUCGcGCc -3'
miRNA:   3'- -CCU-----ACGGCUCGCA--------CGGGC-AGAGGC-CG- -5'
23953 5' -60 NC_005262.1 + 48091 0.66 0.522525
Target:  5'- ---cGUCGAGCGcauagcgcUGCUCGUCcgUCuCGGCg -3'
miRNA:   3'- ccuaCGGCUCGC--------ACGGGCAG--AG-GCCG- -5'
23953 5' -60 NC_005262.1 + 42092 0.68 0.435878
Target:  5'- --uUGCCGAucuGCGUGCCCG-CguacagcagCgCGGCg -3'
miRNA:   3'- ccuACGGCU---CGCACGGGCaGa--------G-GCCG- -5'
23953 5' -60 NC_005262.1 + 47852 0.69 0.372038
Target:  5'- uGAaGCCGAGCGUGUgcagcacuuccuccUCGcUCUgCGGCg -3'
miRNA:   3'- cCUaCGGCUCGCACG--------------GGC-AGAgGCCG- -5'
23953 5' -60 NC_005262.1 + 19109 0.7 0.334441
Target:  5'- cGAUGCCacguucggaucGGGCGcggGCgCGUCgCCGGCg -3'
miRNA:   3'- cCUACGG-----------CUCGCa--CGgGCAGaGGCCG- -5'
23953 5' -60 NC_005262.1 + 22115 0.66 0.512537
Target:  5'- aGAUGCCGA---UGCCgGUg-CCGGCg -3'
miRNA:   3'- cCUACGGCUcgcACGGgCAgaGGCCG- -5'
23953 5' -60 NC_005262.1 + 5685 0.67 0.486952
Target:  5'- gGGAgaggGCCgGAGCGgaggcaggugcgcuuUGCguagcgUCGUUUCCGGCa -3'
miRNA:   3'- -CCUa---CGG-CUCGC---------------ACG------GGCAGAGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.