miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23956 5' -61.9 NC_005262.1 + 63303 0.69 0.269572
Target:  5'- gGCUCGGCgUCGAcguggaacacgcGCGCCgcGUCGCCGa -3'
miRNA:   3'- -CGGGCCG-AGCU------------CGUGGaaCGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 60767 0.66 0.460499
Target:  5'- gGCgCCGGCUCaa-CGgCUU-CCGCCGGa -3'
miRNA:   3'- -CG-GGCCGAGcucGUgGAAcGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 60501 0.68 0.348234
Target:  5'- cGCCgGGCcgCGcGGCGCag-GCCGCCa- -3'
miRNA:   3'- -CGGgCCGa-GC-UCGUGgaaCGGCGGcc -5'
23956 5' -61.9 NC_005262.1 + 60046 0.68 0.340447
Target:  5'- ---gGGCUCGAuCGCCUgaGCCGCgCGGa -3'
miRNA:   3'- cgggCCGAGCUcGUGGAa-CGGCG-GCC- -5'
23956 5' -61.9 NC_005262.1 + 59694 0.66 0.451183
Target:  5'- -aUCGGCgugccgccacgCGGGCGCUacGUCGCCGGc -3'
miRNA:   3'- cgGGCCGa----------GCUCGUGGaaCGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 59221 0.67 0.364185
Target:  5'- cGCCCGaGC---AGCGCC--GCCGCUGGc -3'
miRNA:   3'- -CGGGC-CGagcUCGUGGaaCGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 59190 0.72 0.195792
Target:  5'- gGCCCGcugaUgGAGCGCCUUGCgaaGUCGGg -3'
miRNA:   3'- -CGGGCcg--AgCUCGUGGAACGg--CGGCC- -5'
23956 5' -61.9 NC_005262.1 + 58765 0.75 0.116733
Target:  5'- gGCgCCGGCcggCGAGCAac-UGCCGCUGGa -3'
miRNA:   3'- -CG-GGCCGa--GCUCGUggaACGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 57665 0.68 0.325254
Target:  5'- uCCCGGCcgcgcacaUCGAgGCgACUgUGCCGCCGu -3'
miRNA:   3'- cGGGCCG--------AGCU-CG-UGGaACGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 55792 0.67 0.372348
Target:  5'- -gCgGGCuUCGAGCAgaacGCCGCCGGc -3'
miRNA:   3'- cgGgCCG-AGCUCGUggaaCGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 55560 0.67 0.387353
Target:  5'- cGCUCGGCuUCGAGCuucGCCgacagcucaugGCcCGCgCGGa -3'
miRNA:   3'- -CGGGCCG-AGCUCG---UGGaa---------CG-GCG-GCC- -5'
23956 5' -61.9 NC_005262.1 + 54907 0.72 0.176472
Target:  5'- cGCCaguucgaCGGCUC--GCACCUgacGCUGCCGGg -3'
miRNA:   3'- -CGG-------GCCGAGcuCGUGGAa--CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 54859 0.68 0.339675
Target:  5'- cGCCCGcGCgagggucaaauaaUCGGGCGCUUUcGCCGCgcacccaagagCGGa -3'
miRNA:   3'- -CGGGC-CG-------------AGCUCGUGGAA-CGGCG-----------GCC- -5'
23956 5' -61.9 NC_005262.1 + 53352 0.73 0.147769
Target:  5'- cGCCCGGCUugcCGAGCAUCUgcaUGCgGUCa- -3'
miRNA:   3'- -CGGGCCGA---GCUCGUGGA---ACGgCGGcc -5'
23956 5' -61.9 NC_005262.1 + 52681 0.68 0.310572
Target:  5'- aGUCCGGgUCGuuGCACCaUUGCC-CCGc -3'
miRNA:   3'- -CGGGCCgAGCu-CGUGG-AACGGcGGCc -5'
23956 5' -61.9 NC_005262.1 + 52676 0.69 0.28882
Target:  5'- aGCuuGugaagcaGCUCGAGCAggaagGCCGCCGGc -3'
miRNA:   3'- -CGggC-------CGAGCUCGUggaa-CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 52211 0.73 0.163848
Target:  5'- aGUC--GCUCGAGCGCUggccGCCGCCGGc -3'
miRNA:   3'- -CGGgcCGAGCUCGUGGaa--CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 51858 0.67 0.394148
Target:  5'- aGCgCGGCgccgcgaacgacgCGAGCacgaccgaGCCgaGCCGCCGa -3'
miRNA:   3'- -CGgGCCGa------------GCUCG--------UGGaaCGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 51548 0.66 0.441971
Target:  5'- -aCCGGCUCGcGUACCacgugGUCGCgcgCGGa -3'
miRNA:   3'- cgGGCCGAGCuCGUGGaa---CGGCG---GCC- -5'
23956 5' -61.9 NC_005262.1 + 51248 0.68 0.317849
Target:  5'- cGCgCCGGCUaCGguaaggacggcaAGCugaACCUcaccgGCCGCCGGc -3'
miRNA:   3'- -CG-GGCCGA-GC------------UCG---UGGAa----CGGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.