miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23961 3' -61.2 NC_005262.1 + 61143 0.69 0.303307
Target:  5'- aCGcCGCCCGGCGCcGCGcAGGcaugGGcCGAUc -3'
miRNA:   3'- gGC-GCGGGCCGCG-CGC-UCU----UCaGCUA- -5'
23961 3' -61.2 NC_005262.1 + 60872 0.67 0.389542
Target:  5'- aUGCGCgCGaaaGCGCGAuGAAGUCGGc -3'
miRNA:   3'- gGCGCGgGCcg-CGCGCU-CUUCAGCUa -5'
23961 3' -61.2 NC_005262.1 + 60311 0.77 0.091285
Target:  5'- uCCGCGUCgGGCGCGauccgcaaugggugaGGGAGGUCGAc -3'
miRNA:   3'- -GGCGCGGgCCGCGCg--------------CUCUUCAGCUa -5'
23961 3' -61.2 NC_005262.1 + 58938 0.7 0.262182
Target:  5'- gCGCGCUucucgguCGGCGCGC-AGcAGUCGAa -3'
miRNA:   3'- gGCGCGG-------GCCGCGCGcUCuUCAGCUa -5'
23961 3' -61.2 NC_005262.1 + 58648 0.67 0.389542
Target:  5'- -aGCgGCCgGGCGCGCGAGuucuaCGAUc -3'
miRNA:   3'- ggCG-CGGgCCGCGCGCUCuuca-GCUA- -5'
23961 3' -61.2 NC_005262.1 + 57449 0.69 0.303307
Target:  5'- uCCGCggauGCCgCGGCG-GCGAcgaugGAGGUCGAg -3'
miRNA:   3'- -GGCG----CGG-GCCGCgCGCU-----CUUCAGCUa -5'
23961 3' -61.2 NC_005262.1 + 57042 0.67 0.386138
Target:  5'- cCCG-GCCacgagcacaacgaGGCGCGCGAGAuGUuCGAc -3'
miRNA:   3'- -GGCgCGGg------------CCGCGCGCUCUuCA-GCUa -5'
23961 3' -61.2 NC_005262.1 + 53027 0.7 0.262818
Target:  5'- gCGCGCCCGGCGCGgGcGGA-UCa-- -3'
miRNA:   3'- gGCGCGGGCCGCGCgCuCUUcAGcua -5'
23961 3' -61.2 NC_005262.1 + 51414 0.72 0.210457
Target:  5'- aCCGCGUgcucggCGGCGCGCGcGAGGgCGAUa -3'
miRNA:   3'- -GGCGCGg-----GCCGCGCGCuCUUCaGCUA- -5'
23961 3' -61.2 NC_005262.1 + 50280 0.66 0.468194
Target:  5'- cCCGCGCCggccgagcccgugaCGGcCGCGCggauuGAGGAGcCGGc -3'
miRNA:   3'- -GGCGCGG--------------GCC-GCGCG-----CUCUUCaGCUa -5'
23961 3' -61.2 NC_005262.1 + 48047 0.68 0.332871
Target:  5'- gCCGCGCCCGcaaGCGCGuc-GGUCGc- -3'
miRNA:   3'- -GGCGCGGGCcg-CGCGCucuUCAGCua -5'
23961 3' -61.2 NC_005262.1 + 47071 0.7 0.262818
Target:  5'- cCCGUgcuGCCCGGUGCGCacAGggGuaUCGAg -3'
miRNA:   3'- -GGCG---CGGGCCGCGCGc-UCuuC--AGCUa -5'
23961 3' -61.2 NC_005262.1 + 46920 0.72 0.205229
Target:  5'- gUGCgGCCCGGCGCGCGgccGGGcgccugcaucAGUUGAUg -3'
miRNA:   3'- gGCG-CGGGCCGCGCGC---UCU----------UCAGCUA- -5'
23961 3' -61.2 NC_005262.1 + 46312 0.71 0.226833
Target:  5'- gUCGCGCgCGGCGCGCGcuucguccuGGAAcUCGGc -3'
miRNA:   3'- -GGCGCGgGCCGCGCGC---------UCUUcAGCUa -5'
23961 3' -61.2 NC_005262.1 + 46130 0.66 0.471053
Target:  5'- gCCGCuuccaGCUCGGCGCGCuGGcGGgCGAUc -3'
miRNA:   3'- -GGCG-----CGGGCCGCGCGcUCuUCaGCUA- -5'
23961 3' -61.2 NC_005262.1 + 43552 0.66 0.452169
Target:  5'- cCUGcCGUCCGGauuccuCGCGCagacguGGGAGGUCGAg -3'
miRNA:   3'- -GGC-GCGGGCC------GCGCG------CUCUUCAGCUa -5'
23961 3' -61.2 NC_005262.1 + 42928 0.67 0.389542
Target:  5'- gUCGuCGUCCGGCGCGCGc---GUCGu- -3'
miRNA:   3'- -GGC-GCGGGCCGCGCGCucuuCAGCua -5'
23961 3' -61.2 NC_005262.1 + 40233 0.77 0.083942
Target:  5'- cCUGCGCCCGcGCGCgGCGGGcGGUUGGUc -3'
miRNA:   3'- -GGCGCGGGC-CGCG-CGCUCuUCAGCUA- -5'
23961 3' -61.2 NC_005262.1 + 39630 0.72 0.205229
Target:  5'- aCCGaCGCCCucGCGCGCGuGAAGgcacUCGAg -3'
miRNA:   3'- -GGC-GCGGGc-CGCGCGCuCUUC----AGCUa -5'
23961 3' -61.2 NC_005262.1 + 37878 0.74 0.150839
Target:  5'- gCGCGCCCGGaggcaCGgGCGGGAAGUaUGGUg -3'
miRNA:   3'- gGCGCGGGCC-----GCgCGCUCUUCA-GCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.