miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23964 3' -56.7 NC_005262.1 + 62101 0.66 0.662428
Target:  5'- cGUcGCCGCCGCgGca-ACCGCGUc- -3'
miRNA:   3'- aCAaCGGCGGCGgUaggUGGUGCAac -5'
23964 3' -56.7 NC_005262.1 + 59232 0.66 0.683982
Target:  5'- ---cGCCGCCGCUggcgcgagAUgCGCCGCGc-- -3'
miRNA:   3'- acaaCGGCGGCGG--------UAgGUGGUGCaac -5'
23964 3' -56.7 NC_005262.1 + 59115 0.69 0.462112
Target:  5'- --aUGCCGCgGCCcgAUCCgGCCGCGg-- -3'
miRNA:   3'- acaACGGCGgCGG--UAGG-UGGUGCaac -5'
23964 3' -56.7 NC_005262.1 + 53294 0.68 0.533405
Target:  5'- ---cGCUGCUGCUggCCGCCAUGcUGg -3'
miRNA:   3'- acaaCGGCGGCGGuaGGUGGUGCaAC- -5'
23964 3' -56.7 NC_005262.1 + 52763 0.72 0.313124
Target:  5'- cUGUUGCUGCgCGCgGUCUugCGCGa-- -3'
miRNA:   3'- -ACAACGGCG-GCGgUAGGugGUGCaac -5'
23964 3' -56.7 NC_005262.1 + 51490 0.67 0.608232
Target:  5'- ---aGCCGCaUGCCGUCgAaCACGUUGc -3'
miRNA:   3'- acaaCGGCG-GCGGUAGgUgGUGCAAC- -5'
23964 3' -56.7 NC_005262.1 + 51464 0.66 0.640763
Target:  5'- --aUGCUGCCGCCG-CgCGCUGCGg-- -3'
miRNA:   3'- acaACGGCGGCGGUaG-GUGGUGCaac -5'
23964 3' -56.7 NC_005262.1 + 51249 0.68 0.554523
Target:  5'- ---cGCCGCCGCgAccugCCGCCGCa--- -3'
miRNA:   3'- acaaCGGCGGCGgUa---GGUGGUGcaac -5'
23964 3' -56.7 NC_005262.1 + 50295 0.68 0.533405
Target:  5'- --aUGCCGCCGCCuucgccUUCGCCAgCGa-- -3'
miRNA:   3'- acaACGGCGGCGGu-----AGGUGGU-GCaac -5'
23964 3' -56.7 NC_005262.1 + 49493 0.68 0.543931
Target:  5'- gGUU-CCGCCGCCcUCCcguCCACGc-- -3'
miRNA:   3'- aCAAcGGCGGCGGuAGGu--GGUGCaac -5'
23964 3' -56.7 NC_005262.1 + 46249 0.68 0.554523
Target:  5'- cGcgGCUGCCGCCucgcgcgCgACCGCGUg- -3'
miRNA:   3'- aCaaCGGCGGCGGua-----GgUGGUGCAac -5'
23964 3' -56.7 NC_005262.1 + 45149 0.7 0.433115
Target:  5'- --aUGCCGCUGCUcacGUCCACC-CGg-- -3'
miRNA:   3'- acaACGGCGGCGG---UAGGUGGuGCaac -5'
23964 3' -56.7 NC_005262.1 + 43546 0.67 0.58663
Target:  5'- --gUGCCGCCuGCCGUCCGgauuccUCGCGc-- -3'
miRNA:   3'- acaACGGCGG-CGGUAGGU------GGUGCaac -5'
23964 3' -56.7 NC_005262.1 + 42168 0.69 0.472004
Target:  5'- cGUcGCCGUCGCCGUCgCACUcCGg-- -3'
miRNA:   3'- aCAaCGGCGGCGGUAG-GUGGuGCaac -5'
23964 3' -56.7 NC_005262.1 + 42123 0.67 0.629914
Target:  5'- cGgcGCCGCCGCuCAggUugCGCGUg- -3'
miRNA:   3'- aCaaCGGCGGCG-GUagGugGUGCAac -5'
23964 3' -56.7 NC_005262.1 + 40919 0.68 0.543931
Target:  5'- ---cGCCcucGCCGUCAUCCAgUACGUg- -3'
miRNA:   3'- acaaCGG---CGGCGGUAGGUgGUGCAac -5'
23964 3' -56.7 NC_005262.1 + 36018 0.67 0.619068
Target:  5'- --gUGCCGUCGCauCAUCgUGCCGCGUg- -3'
miRNA:   3'- acaACGGCGGCG--GUAG-GUGGUGCAac -5'
23964 3' -56.7 NC_005262.1 + 34202 0.67 0.619068
Target:  5'- ---aGCUGCCGCCcgCgAUCGCGg-- -3'
miRNA:   3'- acaaCGGCGGCGGuaGgUGGUGCaac -5'
23964 3' -56.7 NC_005262.1 + 34012 0.67 0.629914
Target:  5'- cUGgggUGCCG-CGCCGUCCGgCACu--- -3'
miRNA:   3'- -ACa--ACGGCgGCGGUAGGUgGUGcaac -5'
23964 3' -56.7 NC_005262.1 + 33849 0.66 0.651604
Target:  5'- ---cGCCGCCGCCcgCguCCGgGUc- -3'
miRNA:   3'- acaaCGGCGGCGGuaGguGGUgCAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.