miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23964 5' -62.5 NC_005262.1 + 51393 0.66 0.425584
Target:  5'- aGGCcGCGccugaccguGUGCaCCGCGUgcucGGCGGCGc -3'
miRNA:   3'- -CCGcUGCau-------CGCG-GGCGCA----CCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 28161 0.66 0.425584
Target:  5'- aGCG-CGcGGCGCaacugCGCGcGGCGGCc -3'
miRNA:   3'- cCGCuGCaUCGCGg----GCGCaCCGCCGu -5'
23964 5' -62.5 NC_005262.1 + 58614 0.66 0.425584
Target:  5'- cGGCcGCGcccGCGCCCGCGacGcCGGCc -3'
miRNA:   3'- -CCGcUGCau-CGCGGGCGCacC-GCCGu -5'
23964 5' -62.5 NC_005262.1 + 44704 0.66 0.420232
Target:  5'- uGGUGACGgcGUGgCUgcaucaguucaaggaGCGcGGCGGCGu -3'
miRNA:   3'- -CCGCUGCauCGCgGG---------------CGCaCCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 982 0.66 0.416687
Target:  5'- -cCGA-GUGGCGaCCUGCGgggcggGGCGGUg -3'
miRNA:   3'- ccGCUgCAUCGC-GGGCGCa-----CCGCCGu -5'
23964 5' -62.5 NC_005262.1 + 16586 0.66 0.416687
Target:  5'- aGGCG-CGU-GUGCUgGuCGaGGCGGCGa -3'
miRNA:   3'- -CCGCuGCAuCGCGGgC-GCaCCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 52366 0.66 0.415803
Target:  5'- cGCGGCGUgucgcgcaccuucGGCgGCCCgGCGcgGcGCGGCu -3'
miRNA:   3'- cCGCUGCA-------------UCG-CGGG-CGCa-C-CGCCGu -5'
23964 5' -62.5 NC_005262.1 + 17331 0.66 0.411403
Target:  5'- uGCGuCGUGGCcggcgcggcauucggGUCCgGCGcgGGCGGCGc -3'
miRNA:   3'- cCGCuGCAUCG---------------CGGG-CGCa-CCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 26558 0.66 0.407904
Target:  5'- cGGcCGACGcgcuGCGCCaguuCGCGcaggcauacgcUGGCGGCc -3'
miRNA:   3'- -CC-GCUGCau--CGCGG----GCGC-----------ACCGCCGu -5'
23964 5' -62.5 NC_005262.1 + 17685 0.66 0.407032
Target:  5'- cGGgGugGUAGUGCUucagguaCGCG-GcGCGGCc -3'
miRNA:   3'- -CCgCugCAUCGCGG-------GCGCaC-CGCCGu -5'
23964 5' -62.5 NC_005262.1 + 13171 0.66 0.405292
Target:  5'- cGGCGACauuuccagcaacagGUucagccgaAGCGCUCGCGcuaccggguUGaGCGGCAg -3'
miRNA:   3'- -CCGCUG--------------CA--------UCGCGGGCGC---------AC-CGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 52313 0.66 0.399238
Target:  5'- cGGCGACGcggcccauGUGCUCGCGcgcgaGcGCGGUAg -3'
miRNA:   3'- -CCGCUGCau------CGCGGGCGCa----C-CGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 51675 0.66 0.39069
Target:  5'- cGCGGCGaucUGCUCGCGcgcacGGCGGCGc -3'
miRNA:   3'- cCGCUGCaucGCGGGCGCa----CCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 58458 0.66 0.39069
Target:  5'- aGGCGuGCGcGGCGUCaCGaCGUcGGaCGGCAc -3'
miRNA:   3'- -CCGC-UGCaUCGCGG-GC-GCA-CC-GCCGU- -5'
23964 5' -62.5 NC_005262.1 + 9432 0.66 0.39069
Target:  5'- cGGCGAgCGgguGCgaaGCCCGCauUGuGCGGCAc -3'
miRNA:   3'- -CCGCU-GCau-CG---CGGGCGc-AC-CGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 11874 0.66 0.39069
Target:  5'- cGGCGACGUGuauCGCgCGaaagGUGGCcgcGGCAc -3'
miRNA:   3'- -CCGCUGCAUc--GCGgGCg---CACCG---CCGU- -5'
23964 5' -62.5 NC_005262.1 + 45151 0.66 0.39069
Target:  5'- cGCGACaaGGCGCUCGCGcuGCGuGCGg -3'
miRNA:   3'- cCGCUGcaUCGCGGGCGCacCGC-CGU- -5'
23964 5' -62.5 NC_005262.1 + 49757 0.66 0.39069
Target:  5'- cGGCGGCGcccGCGCCCGa--GGCuccGGCc -3'
miRNA:   3'- -CCGCUGCau-CGCGGGCgcaCCG---CCGu -5'
23964 5' -62.5 NC_005262.1 + 34126 0.66 0.39069
Target:  5'- gGGUugGGCGggcuGCGCgggCGCG-GGCGGCAu -3'
miRNA:   3'- -CCG--CUGCau--CGCGg--GCGCaCCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 215 0.66 0.389842
Target:  5'- gGGCGGCGgAGCcagacacgcuaccGCCgGC--GGCGGCGg -3'
miRNA:   3'- -CCGCUGCaUCG-------------CGGgCGcaCCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.