Results 1 - 20 of 40 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23969 | 3' | -52.6 | NC_005262.1 | + | 27579 | 0.66 | 0.869492 |
Target: 5'- cGGCUUUGCAGaGaugaGGUCA--UGGCGu -3' miRNA: 3'- aUCGAAACGUCgCg---CCAGUuaGCUGC- -5' |
|||||||
23969 | 3' | -52.6 | NC_005262.1 | + | 52389 | 0.66 | 0.869492 |
Target: 5'- cGGCccggcGCGGCGCGG-Cu-UCGGCGu -3' miRNA: 3'- aUCGaaa--CGUCGCGCCaGuuAGCUGC- -5' |
|||||||
23969 | 3' | -52.6 | NC_005262.1 | + | 63714 | 0.66 | 0.861251 |
Target: 5'- aAGCg-UGCGGCGCGGcCGAcuucuUCG-CGa -3' miRNA: 3'- aUCGaaACGUCGCGCCaGUU-----AGCuGC- -5' |
|||||||
23969 | 3' | -52.6 | NC_005262.1 | + | 39339 | 0.66 | 0.852761 |
Target: 5'- -uGCcgUGCAGCGCcaUCGAUCgGGCGu -3' miRNA: 3'- auCGaaACGUCGCGccAGUUAG-CUGC- -5' |
|||||||
23969 | 3' | -52.6 | NC_005262.1 | + | 41568 | 0.66 | 0.851899 |
Target: 5'- cGGCguggGCGGCGCGGcCGugagcuuGUCGAgCGc -3' miRNA: 3'- aUCGaaa-CGUCGCGCCaGU-------UAGCU-GC- -5' |
|||||||
23969 | 3' | -52.6 | NC_005262.1 | + | 24723 | 0.66 | 0.844031 |
Target: 5'- gAGCUgaucGCgcuGGCGCGcG-CGAUCGGCGu -3' miRNA: 3'- aUCGAaa--CG---UCGCGC-CaGUUAGCUGC- -5' |
|||||||
23969 | 3' | -52.6 | NC_005262.1 | + | 17093 | 0.66 | 0.844031 |
Target: 5'- cGGCUUguccacUGCGcGCGCGG-CGcugacugcAUCGGCGg -3' miRNA: 3'- aUCGAA------ACGU-CGCGCCaGU--------UAGCUGC- -5' |
|||||||
23969 | 3' | -52.6 | NC_005262.1 | + | 13796 | 0.66 | 0.844031 |
Target: 5'- gGGCgc--CGGCGCGGcUUcAUCGGCGg -3' miRNA: 3'- aUCGaaacGUCGCGCC-AGuUAGCUGC- -5' |
|||||||
23969 | 3' | -52.6 | NC_005262.1 | + | 34131 | 0.66 | 0.844031 |
Target: 5'- gGGCgg-GCuGCGCGGgcgCGggCGGCa -3' miRNA: 3'- aUCGaaaCGuCGCGCCa--GUuaGCUGc -5' |
|||||||
23969 | 3' | -52.6 | NC_005262.1 | + | 22087 | 0.66 | 0.835068 |
Target: 5'- cGGCUcgcacacGCA-CGCGGUCAacGUCGACc -3' miRNA: 3'- aUCGAaa-----CGUcGCGCCAGU--UAGCUGc -5' |
|||||||
23969 | 3' | -52.6 | NC_005262.1 | + | 28680 | 0.66 | 0.835068 |
Target: 5'- aGGUccUGauggaggaaGGCGCGGUCGAcgauaUCGACGa -3' miRNA: 3'- aUCGaaACg--------UCGCGCCAGUU-----AGCUGC- -5' |
|||||||
23969 | 3' | -52.6 | NC_005262.1 | + | 5075 | 0.66 | 0.835068 |
Target: 5'- cGGCg--GCGGCGCGuG-CGAccggcUCGGCGg -3' miRNA: 3'- aUCGaaaCGUCGCGC-CaGUU-----AGCUGC- -5' |
|||||||
23969 | 3' | -52.6 | NC_005262.1 | + | 43409 | 0.67 | 0.826812 |
Target: 5'- gAGCUcaaCGGCGCGGcgcucaacgucuaucCGAUCGACGg -3' miRNA: 3'- aUCGAaacGUCGCGCCa--------------GUUAGCUGC- -5' |
|||||||
23969 | 3' | -52.6 | NC_005262.1 | + | 10584 | 0.67 | 0.816487 |
Target: 5'- -cGCggaGCAGCGCGGcgCGAgCGGCu -3' miRNA: 3'- auCGaaaCGUCGCGCCa-GUUaGCUGc -5' |
|||||||
23969 | 3' | -52.6 | NC_005262.1 | + | 7028 | 0.67 | 0.816487 |
Target: 5'- cAGCUUcaUGUAGCGCucGUCGccCGACGc -3' miRNA: 3'- aUCGAA--ACGUCGCGc-CAGUuaGCUGC- -5' |
|||||||
23969 | 3' | -52.6 | NC_005262.1 | + | 15443 | 0.67 | 0.806889 |
Target: 5'- cGGCcgccaGCAGCGCcgGGUCGGUCGugcCGa -3' miRNA: 3'- aUCGaaa--CGUCGCG--CCAGUUAGCu--GC- -5' |
|||||||
23969 | 3' | -52.6 | NC_005262.1 | + | 10472 | 0.67 | 0.806889 |
Target: 5'- gUAGCg--GCGcGCGCGGUCGcUCGcCu -3' miRNA: 3'- -AUCGaaaCGU-CGCGCCAGUuAGCuGc -5' |
|||||||
23969 | 3' | -52.6 | NC_005262.1 | + | 58830 | 0.67 | 0.787131 |
Target: 5'- aUGGCUgcUGCGGCGCuucGGcacgcaGAUCGGCGa -3' miRNA: 3'- -AUCGAa-ACGUCGCG---CCag----UUAGCUGC- -5' |
|||||||
23969 | 3' | -52.6 | NC_005262.1 | + | 11884 | 0.68 | 0.776995 |
Target: 5'- cAGCUugUUGcCGGCgaaGCGGUCGGugccguUCGGCGg -3' miRNA: 3'- aUCGA--AAC-GUCG---CGCCAGUU------AGCUGC- -5' |
|||||||
23969 | 3' | -52.6 | NC_005262.1 | + | 34989 | 0.68 | 0.766702 |
Target: 5'- gAGCUcgagaUGCgcgGGCGCgaGGUCAcgGUCGACGu -3' miRNA: 3'- aUCGAa----ACG---UCGCG--CCAGU--UAGCUGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home