miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23982 5' -66.1 NC_005262.1 + 33292 0.66 0.272124
Target:  5'- aUCGCGCGCACGC--CgGGCGCcgaagCCg -3'
miRNA:   3'- cGGCGCGCGUGCGccGgCCGCGa----GGg -5'
23982 5' -66.1 NC_005262.1 + 30084 0.66 0.298393
Target:  5'- cGCCggcaagaaggGCGaCGaCACGcCGGCCGcCGCgaagCCCa -3'
miRNA:   3'- -CGG----------CGC-GC-GUGC-GCCGGCcGCGa---GGG- -5'
23982 5' -66.1 NC_005262.1 + 12250 0.66 0.265853
Target:  5'- gGUCGCGUcgauggucggGCAccugucgauCGCGGCCGGCGag-CCg -3'
miRNA:   3'- -CGGCGCG----------CGU---------GCGCCGGCCGCgagGG- -5'
23982 5' -66.1 NC_005262.1 + 12116 0.66 0.291646
Target:  5'- cGCCGcCGUGCGCGCGagcagaucGCCG-CGCUg-- -3'
miRNA:   3'- -CGGC-GCGCGUGCGC--------CGGCcGCGAggg -5'
23982 5' -66.1 NC_005262.1 + 55216 0.66 0.285019
Target:  5'- cGCCGuCGCuucguCGCGCaGGCCG-CGCUCa- -3'
miRNA:   3'- -CGGC-GCGc----GUGCG-CCGGCcGCGAGgg -5'
23982 5' -66.1 NC_005262.1 + 40722 0.66 0.272124
Target:  5'- gGCgGCGCugacgcccucgaGCACggGCGGCgGcGCGUUCCa -3'
miRNA:   3'- -CGgCGCG------------CGUG--CGCCGgC-CGCGAGGg -5'
23982 5' -66.1 NC_005262.1 + 34205 0.66 0.291646
Target:  5'- uGCCGCcCGCGauCGCGGCUucgGGCGacacgCUCg -3'
miRNA:   3'- -CGGCGcGCGU--GCGCCGG---CCGCga---GGG- -5'
23982 5' -66.1 NC_005262.1 + 23846 0.66 0.272124
Target:  5'- gGCCgGCaCGC-CGCccuuGCCGGUGCcgCCCg -3'
miRNA:   3'- -CGG-CGcGCGuGCGc---CGGCCGCGa-GGG- -5'
23982 5' -66.1 NC_005262.1 + 26620 0.66 0.278512
Target:  5'- cCCGCGgGCAaaucgaagcgccCGCGuaGCUGGCGCaccgCCUg -3'
miRNA:   3'- cGGCGCgCGU------------GCGC--CGGCCGCGa---GGG- -5'
23982 5' -66.1 NC_005262.1 + 12792 0.66 0.265853
Target:  5'- cGCCcgugagcauuggGCG-GCGCGCaGCCGGCGCg--- -3'
miRNA:   3'- -CGG------------CGCgCGUGCGcCGGCCGCGaggg -5'
23982 5' -66.1 NC_005262.1 + 45416 0.66 0.272124
Target:  5'- aGCCGCGCaaaACuCGGCCGG-GCUUa- -3'
miRNA:   3'- -CGGCGCGcg-UGcGCCGGCCgCGAGgg -5'
23982 5' -66.1 NC_005262.1 + 10582 0.66 0.291646
Target:  5'- aCCGCGgaGCAgCGCGGCgCGaGCgGCUUCg -3'
miRNA:   3'- cGGCGCg-CGU-GCGCCG-GC-CG-CGAGGg -5'
23982 5' -66.1 NC_005262.1 + 3493 0.66 0.291646
Target:  5'- aUCGCGCcCgACGCGGaUCGGCuuacgguggGUUCCCg -3'
miRNA:   3'- cGGCGCGcG-UGCGCC-GGCCG---------CGAGGG- -5'
23982 5' -66.1 NC_005262.1 + 50303 0.66 0.278512
Target:  5'- gGCCGCGCGgAUugaggaGcCGGCCGcaGCGC-CCg -3'
miRNA:   3'- -CGGCGCGCgUG------C-GCCGGC--CGCGaGGg -5'
23982 5' -66.1 NC_005262.1 + 44148 0.66 0.265853
Target:  5'- gGCCGgaCGCGCGCGCGaucgggcaggaGCgCGGCgGCgagCUCa -3'
miRNA:   3'- -CGGC--GCGCGUGCGC-----------CG-GCCG-CGa--GGG- -5'
23982 5' -66.1 NC_005262.1 + 53332 0.66 0.291646
Target:  5'- aCCGCGCGCGcCGCuaccucGCCGaccGCGCgaaCCUg -3'
miRNA:   3'- cGGCGCGCGU-GCGc-----CGGC---CGCGa--GGG- -5'
23982 5' -66.1 NC_005262.1 + 16286 0.66 0.278512
Target:  5'- uGCUGCGCGCcgcuCGCGGC--GUGCaaCCg -3'
miRNA:   3'- -CGGCGCGCGu---GCGCCGgcCGCGagGG- -5'
23982 5' -66.1 NC_005262.1 + 35848 0.66 0.263995
Target:  5'- cGCCGCGaccgcccagauguuUGUGCGCGGCgaCGcGCGCaCCUa -3'
miRNA:   3'- -CGGCGC--------------GCGUGCGCCG--GC-CGCGaGGG- -5'
23982 5' -66.1 NC_005262.1 + 14167 0.66 0.265853
Target:  5'- cGCCGCGC-CGaggagUGCGGCaaGCcGCUCCa -3'
miRNA:   3'- -CGGCGCGcGU-----GCGCCGgcCG-CGAGGg -5'
23982 5' -66.1 NC_005262.1 + 5123 0.66 0.278512
Target:  5'- uGCCuGCcaUGCGCGaCGGgCGGCGCUgaUCCu -3'
miRNA:   3'- -CGG-CGc-GCGUGC-GCCgGCCGCGA--GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.